Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00500 ATGGGAAGAGCTCCTTGTTGTGACAAAGACAAAGTTAAGAGGGGACCATGGTCTCCTGATGAAGATGCAAAACTCAAGAATTATTTAGCAATTCATGGAACTGTTGGAAATTGGATTGCATTGCCTAAAAAAGCtgGCCTTAAGCGGTGTGGAAAGAGTTGTCGTCTAAGGTGGCTGAATTATCTTAGGCCTGACATCAAACATGGAGGCTTTACTGAGGAAGAAGATACCATCATTTgtactctctatgctcaaatgGGTAGTAGATGGTCTGCCATAGCATCAAAACTACCTGGCAGAACAGACAATGATGTAAAAAACTATTGGAACACAAAactgaagaagaaaattatGGCAGGAAAAGTTAGCCTCAAATCATTGACTGAAAATGACAATGCTACCCCTTCAACCCCATCACTAACTCAAAGTTGCAACAATTTTGATGCTAGTTATGGATTCAACAATAATGAAAAAAACATTGGTTTTGATCAAATTCATGATGTTGGTGTCTCAGAAATTGGTTCAAGTAACaacaatattgatattaatCCTATGATGTCAATGTCTCAAGACAATTCAAGCATTGGAGTGAACAACAATTGTGATCAGCTGGCTGGTGATGAATCTTTGGAACCACTAATGGATTTTGGCTTTGGAGTTGGTAGTGATTTTGCTTCAAGTTGTTGCTTTCCTGAGTGGGTTGATTTTAGTTATGCTGACATTAAGACAAATTGA 735 0.3578 MGRAPCCDKDKVKRGPWSPDEDAKLKNYLAIHGTVGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDTIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVSLKSLTENDNATPSTPSLTQSCNNFDASYGFNNNEKNIGFDQIHDVGVSEIGSSNNNIDINPMMSMSQDNSSIGVNNNCDQLAGDESLEPLMDFGFGVGSDFASSCCFPEWVDFSYADIKTN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00500 244 CDD SANT 71 113 IPR001005 -
Tsu01g00500 244 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu01g00500 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu01g00500 244 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tsu01g00500 244 PANTHER OS09G0431300 PROTEIN 1 176 - -
Tsu01g00500 244 CDD SANT 16 62 IPR001005 -
Tsu01g00500 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu01g00500 244 PANTHER OS09G0431300 PROTEIN 1 176 - -
Tsu01g00500 244 SMART sant 13 64 IPR001005 -
Tsu01g00500 244 SMART sant 67 115 IPR001005 -
Tsu01g00500 244 Gene3D - 7 68 - -
Tsu01g00500 244 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu01g00500 244 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu01g00500 244 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu01g00500 244 Gene3D - 70 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00500 Tsu-Chr1 4378447 4380418 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00500 1 137 MYB Transcription Factor Family AT5G57620 70.073 5.36e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g00500 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00500 K09422 - gmx:100789985 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00500 01 4378447 4380418 Tsu01g00500 01 4378447 4380418 ECH