Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00497 ATGGAGGAATACACGAataatccaaatcaaaatcaaagttcaAGGCCAAATTTCTTGTATTCTATTGGTAGTGGAAACAACCAAAACCaacatcatcataatcaaaTTCCAATGAATATGTTTCATGTTCAATCAAGTGGATCAGATCATTgttttcatcaacaacaacacacTGCTGTGAAAACTGAAGCAAATAGTAGTTCACGACTTCACACACCAATTTTTCATTACCCTAATTTAATGAgaacaaatattattaatcctcacaataataatattatgcataatcatcatcatcaaggGAGTCCAAGCAGTTCTAGTAATGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCACCGGATGTGGTGGCGCGTCTGGTTGCAGCTAGGCAAGAGTTTGAAGCACGACAAAGATCTTCAGTTAACTCCAGGGAAAATTCTAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAAGAGAATCGAAACTCAGCTAAATACTCTTTGCAATGGTCCCCTTCGTATCTTCCCTGGTGAAGATAAAAATGAAGGCGCTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCCGAGATTGATCCTCGAGCAGAAGACCGTGAACTGAAAAACCACTTGCTCAAAAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTtccaagaagaaaaagaaaggaaaattgCCTAAAGAAGCTAGACAAAAGCTACTTAGTTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACTGGTTTGGATCAGAAGCAAATTAATAATTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCAGCTCTTTATATGGATGGTCACTACATGGCCGATGGTCCCTACCGTCTAGGACCATAA 1125 0.3502 MEEYTNNPNQNQSSRPNFLYSIGSGNNQNQHHHNQIPMNMFHVQSSGSDHCFHQQQHTAVKTEANSSSRLHTPIFHYPNLMRTNIINPHNNNIMHNHHHQGSPSSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKVGAPPDVVARLVAARQEFEARQRSSVNSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRIETQLNTLCNGPLRIFPGEDKNEGAGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00497 374 Pfam KNOX2 domain 167 212 IPR005541 GO:0003677|GO:0005634
Tsu01g00497 374 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Tsu01g00497 374 MobiDBLite consensus disorder prediction 91 111 - -
Tsu01g00497 374 Pfam ELK domain 256 277 IPR005539 GO:0003677
Tsu01g00497 374 Gene3D - 281 343 - -
Tsu01g00497 374 SUPERFAMILY Homeodomain-like 277 351 IPR009057 -
Tsu01g00497 374 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
Tsu01g00497 374 SMART HOX_1 278 343 IPR001356 GO:0003677
Tsu01g00497 374 Pfam KNOX1 domain 112 154 IPR005540 GO:0003677|GO:0005634
Tsu01g00497 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 366 - -
Tsu01g00497 374 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g00497 374 CDD homeodomain 288 340 IPR001356 GO:0003677
Tsu01g00497 374 SMART ELK_2 256 277 IPR005539 GO:0003677
Tsu01g00497 374 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 366 - -
Tsu01g00497 374 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Tsu01g00497 374 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Tsu01g00497 374 MobiDBLite consensus disorder prediction 215 250 - -
Tsu01g00497 374 SMART KNOX1_2 111 155 IPR005540 GO:0003677|GO:0005634
Tsu01g00497 374 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00497 Tsu-Chr1 4321668 4327854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00497 59 374 Homeobox Transcription Factor Family AT4G08150 72.812 2.46e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu01g00497 KNOX2 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00497 - - pvu:PHAVU_001G032200g 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00497 01 4321668 4327854 Tsu01g00497 01 4321668 4327854 ECH
Tsu07g00431 07 3316052 3316564 Tsu01g00497 01 4321668 4327854 ECH