Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00495 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATACTAAACTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTTCCACAaaaaattgGTTTGAAGCGTTGTGGAAAGAGTTGTCGTTTAAGGTGGTTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTCTCTGAAGAAGAAGATAACATTATTTGTAGTCTTTACATTAGTATTGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAATTATTGGAACACAAGGTTGAAAAAGAAGCTTTTGGGAAAACATCgcaaagaacaacaacaacaagcaCGTAATCGAGGCAATAATGGTGTTATCATTAAGCAAGAAAGCAATATTAATCATAGTGATCAATATTCCTTATCAAATTTGGTTCAAGAACAATCATATTTGCCACATGTAATGCAAAATTTGCTATCAACACCTCCACCGCAGCCATCGCCACAGCCACCAATGTTGTCATCATACACAAACCAAGGCTTCAATGATCAAGATTCTATTAGAAAACTACTTATCAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATCCTAGTACTAATAACTTTGATGGTTTGAATCTTCCATTCTCAAATGCTACTTCTTCATCTCATGAACAAGTTTATGAACAAGAACATGTTGGATCATCTACTTGTGTTAATTCTTCCAATGGtaacaataataacaaccaAGTACAATTTGTACAAAATGGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGAAAATTTATCCAAGAAATTGATCATATGGTATCTACTAATAATTTTCCACAAAGATTTGATGGGTTGGAATTCTTTTTTGGTGAAGAAGACATGAGTATTGATAATAATAAGATAGAAGGTTCTAGTACTAATTGGGGTGAAGCTACAACTTCAAGTTATCATCATTCTCTTGATTCAAAATACCAAGGTTAA 1038 0.3382 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQQARNRGNNGVIIKQESNINHSDQYSLSNLVQEQSYLPHVMQNLLSTPPPQPSPQPPMLSSYTNQGFNDQDSIRKLLIKLGGRFSGDYHPNPSTNNFDGLNLPFSNATSSSHEQVYEQEHVGSSTCVNSSNGNNNNNQVQFVQNGQYFDSVQEEQGKFIQEIDHMVSTNNFPQRFDGLEFFFGEEDMSIDNNKIEGSSTNWGEATTSSYHHSLDSKYQG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00495 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu01g00495 345 CDD SANT 71 113 IPR001005 -
Tsu01g00495 345 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 331 - -
Tsu01g00495 345 PANTHER OS09G0431300 PROTEIN 1 331 - -
Tsu01g00495 345 Gene3D - 7 68 - -
Tsu01g00495 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu01g00495 345 Gene3D - 70 138 - -
Tsu01g00495 345 CDD SANT 16 62 IPR001005 -
Tsu01g00495 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu01g00495 345 MobiDBLite consensus disorder prediction 168 192 - -
Tsu01g00495 345 SMART sant 13 64 IPR001005 -
Tsu01g00495 345 SMART sant 67 115 IPR001005 -
Tsu01g00495 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu01g00495 345 MobiDBLite consensus disorder prediction 319 345 - -
Tsu01g00495 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu01g00495 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu01g00495 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00495 Tsu-Chr1 4300250 4301890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00495 1 228 MYB Transcription Factor Family AT3G49690 57.203 3.84e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g00495 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00495 K09422 - gmx:778079 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00495 01 4300250 4301890 Tsu01g00495 01 4300250 4301890 ECH
Tsu01g00495 01 4300250 4301890 Tsu07g00840 07 6878667 6879916 PCT