Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00490 ATGGATCTGTATTTACTCGGTTGGATTTTAAGCTCCGTTCTGAGTCTGTTTGCGTTATACAGTTTGATTTACGATGGGAAGAGAAATTGTGATGTGACGGAGAAGGTGAATCAGCGTGTTGATAGCGTGAACAGTACTGATGCTGGAGAAATCAAATCGGAGAAACTTAACGGTGACGCTGATGTTATAATTGTTGGAGCTGGTGTTGCTGGTGCTGCTTTGGCTCATACTCTCGGAAAGGATGGACGTCGAGTGCATGTTATTGAAAGAGATCTGAGTGAGCCTGACAGAATTGTTGGAGAGTTGCTACAACCTGGTGGCTACCTCAAATTAGTTGAACTCGGGCTTGAAGATTGTGTCAACAATATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTTCAAGGATGGAAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCGGATGTCTCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCATCCCTTCCCAAtGTAAATATGGAGCAAGGAACAGTCATTTCCCTACTTGAAGAGAAGGGGACAATCAAAGGTGTGCAATACAAGAATAAAGATGGCCAGGAATTGACAGCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGCAACCCTAAGGTAGATAATCCCTCTTGTTTTGTTGGCTTAGTTTTAGAAAACTGTGAACTCCCATGTGCCAATCACGGCCACGTTATACTTGGAGATCCTTCCCCAATTCTTTTCTATCCTATAAGTAGTACAGAGGTTCGTTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCCTCTATTTCAAACGGTGATATGACAAAGTATCTAAAGACAACAGTTGCTCCGCAGGTCCCCCCTGAGCTTTATGATGCATTCATAGCTGCAGTGAACAAAGGAAACATAAGGACAATGCCGAACAGAAGTATGCCAGCAGATCCTCGTCCTACTCCTGGAGCGGTACTGATGGGAGATGCATTCAACATGCGTCATCCACTAACAGGGGGAGGAATGACTGTAGCATTGTCTGATATTGTGGTGTTGAGAAATCTTCTCAGGCCTTTGCGTGACCTGAATGATGCATCCACACTTTGCAAATACCTTGAGTCCTTTTATACGTTGCGTAAGGTAATGTTGTATGccttttttggttttggttaa 1224 0.4306 MDLYLLGWILSSVLSLFALYSLIYDGKRNCDVTEKVNQRVDSVNSTDAGEIKSEKLNGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVNNIDAQKVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVNMEQGTVISLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVNKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDASTLCKYLESFYTLRKVMLYAFFGFG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00490 407 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Tsu01g00490 407 Pfam Squalene epoxidase 211 399 IPR013698 GO:0004506|GO:0016021|GO:0050660
Tsu01g00490 407 PANTHER SQUALENE MONOOXYGENASE 1 398 IPR040125 GO:0004506|GO:0016126
Tsu01g00490 407 Gene3D - 54 404 IPR036188 -
Tsu01g00490 407 SUPERFAMILY FAD/NAD(P)-binding domain 60 396 IPR036188 -
Tsu01g00490 407 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 398 - -
Tsu01g00490 407 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Tsu01g00490 407 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Tsu01g00490 407 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Tsu01g00490 407 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00490 Tsu-Chr1 4245160 4249860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00490 18 397 Miscellaneous Gene Families AT1G58440 77.225 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00490 K00511 - gmx:100804406 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00490 01 4245160 4249860 Tsu01g00490 01 4245160 4249860 ECH
Tsu01g00490 01 4245160 4249860 Tsu07g00845 07 6917319 6922446 PCT