Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00484 ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAACATTATGACTTCAGAAATGGATATTAGTTCTGTATCCAATATGGCTAAGTCTTCTTCAGAGGTGCCtaatcatcatcatttcctGGGTTCTTCAGCTTGGGAAAATCCACTTATTTCATTGAGTCAGGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCACAATGATTTTGCCAATGCAAATTCAACTTATAACCCTCTTGTTTTGGAGAATCAAGGAATGAGTAGCACCTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGCTTctcagaaatgattggtacctTTGGCCAACATGGGTCAGGTGGTGATCATGTAGCTAACACATCAGGGTATCCAATTCCACCACATCATTATAATCACATCAAGGATGCTGGAAACCAAAGGGGACAATTTAATGGTGAGCAATCTCAAGTTGAGGACTCAGTTCATGAGGATGGAGCTACAGGATCTGCACCTGGCAGTGGAAATAGAAGAAAGAGAGGAATTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCGAGGAAGATCTCTGATGGATCAAAAGAATCTGAAAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAACTAAAGACAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCTGAACTGAACTTTGATGTAGAGCGGCTCTTATCAAAGGATATTCTCCAGTCACGCATAGGACTTGGAATCGGTGGATTTGTTCCTGGTATGAGCTCCTCTCATCCATTCCCAAGTGCAAGTTTCCAGGGAAACATGTCTGGCTTGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGGATGGGATATGATTCCAATACAGCACTTGACAATTTGGGTCCCAATGGGAGGTTGAAACCAGAGTTATAG 1257 0.4065 MGGEENAMEFQHGNENIMTSEMDISSVSNMAKSSSEVPNHHHFLGSSAWENPLISLSQAHTFGGSSMVSHNDFANANSTYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMIGTFGQHGSGGDHVANTSGYPIPPHHYNHIKDAGNQRGQFNGEQSQVEDSVHEDGATGSAPGSGNRRKRGIDQNSTFSPNKNAEGDGVKDSPRKISDGSKESEKKPKVEQSGKQTKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRIGLGIGGFVPGMSSSHPFPSASFQGNMSGLPSSSTQFPPLPQNALDHDFQNFYGMGYDSNTALDNLGPNGRLKPEL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00484 418 MobiDBLite consensus disorder prediction 128 246 - -
Tsu01g00484 418 Gene3D - 255 329 IPR036638 GO:0046983
Tsu01g00484 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 326 IPR036638 GO:0046983
Tsu01g00484 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Tsu01g00484 418 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 418 IPR024097 GO:0006355
Tsu01g00484 418 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 418 - -
Tsu01g00484 418 MobiDBLite consensus disorder prediction 188 202 - -
Tsu01g00484 418 SMART finulus 264 314 IPR011598 GO:0046983
Tsu01g00484 418 MobiDBLite consensus disorder prediction 206 232 - -
Tsu01g00484 418 CDD bHLH_AtBPE_like 248 333 - -
Tsu01g00484 418 Pfam Helix-loop-helix DNA-binding domain 261 309 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00484 Tsu-Chr1 4200253 4204688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00484 1 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.088 6.96e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g00484 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00484 - - gmx:100794464 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00484 01 4200253 4204688 Tsu01g00484 01 4200253 4204688 ECH