Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00482 ATGAAATCCATGATGAATGATAGCAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGATTTTCTCTCTCACCCTACCACATGAAAATGGGAGAGCTTACTTCTGATTCTGACCCTTCTCATCATCCTAATAATCATCATTACTATCATCATGATAACCATGCTTCTTCTTCTGCTGTTGTTCCCTCTAACTTCTacatgtcaccttcaatgtgtTATGGTGTTGGACAAAATAGTAAttcttttcattcttctttATCTATGATGCCACTTAACTCTGATGGATCACTTTGCATTATGGAAGAAGCTCTCACTAGATCACAAACACAtgTGATGATGCCTCCAAAACTAGAGGATTTCCTAGGTGGTGCAACAATGGAAACACATCATGAGTATGAAGGACATGAAACAGAAACAATGGCTTTAAGCTTAGACAGCATTTACTATAACAACAATGTAGAACATCAAGATCATTCTTCATATTATTCAGAACTTGCTTGTCATGGAATGTATGAAGAAGCaccattgttggaacaagaagaTAACAAGGAagaaaacattttttgtttcaaaaactTTGTTGCTCCTAGAGATTATGGTTtggaacaacaacatcatcatcaagtGAATAATACTGTTGTTGGTAGTGTTGGTGATGATGGTTCTGTTGGAACAGTTAATGGTTGTGGAGAGTTACAATCTCTAACCCTTTCAATGAGTCCTGGTTCACAATCAAGTTGTGTTACTGTTCCGACTCAGATTTCATCTTCTGGTAATAATGATTCTGTGATTGTTGAAGCTAAAAAGAGAGGACATGGTAAGGTTGGAAAAAAGCAACCTGTTCATAGGAAATCTATTGATACATTTGGACAGAGAACTTCTCAGTTTAGAGGAGTTACAAGgcATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACAAGGAAAGGAAGACAAGTTTATTTAGGTGGTTATGATTTGGAAGAGAAAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAGTATTGGGGTCCTTCAACACATATAAACTTCCCGCTTGAAAAATACCAAAATGAACTTGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCACTTGAGAAGAAAGAGTAGTGGTTTTTCTAGGGGAGCATCAATGTATAGAGGAGTGACAAGGCACCACCAACATGGTAGATGGCAAGCAAGAATAGGCAGAGTTGCAGGAAATAGGGACCTTTATCTTGGCACATTCAGCACACAAGAGGAAGCGGCTGAATCATATGATGTAGCTGCAATCAAATTCCGTGGTCTAAACGCAGTCACAAACTTCGACATGTCTAAATACAATGTCGAAAAAATCATGGCTAGCAACACACTTCTTGTCGGCGAACAAGCTagaagaacaacaaaaaaaatcaaggaaattgaagaacCAAAACCTGAGGACAAAGATTGTAACAACAATGTTGTTGTATCAAACCAAATCACAAATAGTGAAGAAATTGAAGCTGTGAAcaacaatgaaacaaataattGGAATCAGTCCCCACAACAACAAGAGTCAAATACATGTGACCAAAAAACTGTAAAGTATGGAAATTTTTCTATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGGAGGATCTAGCCAAGTTTTGGTAGATGATGATTCCACCAACAAGATGAAAAGGActcatttttcaaattcatcttCACTTGTGACTAGTTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGTACTGGCCCCACTATGCTTTTTCCAAAACCTCCAATTGGGTCAAAAAATTTGAGTCCTATTGCTACTAATGTTGGATCTTGGTTTCCTTCTAGTGGCACTATCTCAATGCCGCATTTTCCGGTTTTCGCGGCTTGGAGCGATGcttag 1953 0.3497 MKSMMNDSNTSDDGNNHNWLGFSLSPYHMKMGELTSDSDPSHHPNNHHYYHHDNHASSSAVVPSNFYMSPSMCYGVGQNSNSFHSSLSMMPLNSDGSLCIMEEALTRSQTHVMMPPKLEDFLGGATMETHHEYEGHETETMALSLDSIYYNNNVEHQDHSSYYSELACHGMYEEAPLLEQEDNKEENIFCFKNFVAPRDYGLEQQHHHQVNNTVVGSVGDDGSVGTVNGCGELQSLTLSMSPGSQSSCVTVPTQISSSGNNDSVIVEAKKRGHGKVGKKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDLEEKAARAYDLAALKYWGPSTHINFPLEKYQNELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFDMSKYNVEKIMASNTLLVGEQARRTTKKIKEIEEPKPEDKDCNNNVVVSNQITNSEEIEAVNNNETNNWNQSPQQQESNTCDQKTVKYGNFSMSLQDIIGIDSVGGSSQVLVDDDSTNKMKRTHFSNSSSLVTSLSSSRECSPDNKSTGPTMLFPKPPIGSKNLSPIATNVGSWFPSSGTISMPHFPVFAAWSDA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00482 650 Pfam AP2 domain 399 448 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 Pfam AP2 domain 296 354 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 ProSiteProfiles AP2/ERF domain profile. 398 456 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 Coils Coil 363 383 - -
Tsu01g00482 650 MobiDBLite consensus disorder prediction 577 604 - -
Tsu01g00482 650 MobiDBLite consensus disorder prediction 33 52 - -
Tsu01g00482 650 CDD AP2 397 458 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 647 - -
Tsu01g00482 650 CDD AP2 295 362 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 SMART rav1_2 296 368 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 SMART rav1_2 398 462 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 Gene3D AP2/ERF domain 398 458 IPR036955 GO:0003700|GO:0006355
Tsu01g00482 650 Gene3D AP2/ERF domain 295 364 IPR036955 GO:0003700|GO:0006355
Tsu01g00482 650 ProSiteProfiles AP2/ERF domain profile. 296 362 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 647 - -
Tsu01g00482 650 PRINTS Ethylene responsive element binding protein signature 438 458 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 PRINTS Ethylene responsive element binding protein signature 297 308 IPR001471 GO:0003700|GO:0006355
Tsu01g00482 650 SUPERFAMILY DNA-binding domain 295 363 IPR016177 GO:0003677
Tsu01g00482 650 SUPERFAMILY DNA-binding domain 397 458 IPR016177 GO:0003677
Tsu01g00482 650 MobiDBLite consensus disorder prediction 577 612 - -
Tsu01g00482 650 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00482 Tsu-Chr1 4173223 4177510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00482 12 484 AP2-EREBP Transcription Factor Family AT4G37750 52.941 1.39e-153 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tsu01g00482 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00482 K09285 - gmx:100798179 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00482 01 4173223 4177510 Tsu01g00482 01 4173223 4177510 ECH
Tsu01g00482 01 4173223 4177510 Tsu07g00847 07 6949503 6952986 PCT