Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00480 ATGGATCTTGGTGGGGTGAGTTTAGATGGGTTAGTTTCTTCAGATCCTGAACAAAAGAACAAATGGTATAATGGATCTGGTTTACTTAAACAAGAAAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACAACAActgatcaacaacaacaacagagaAACAACTCTGTTTCACTTTTGAGATCTAATGCTACAACTATGTTTTCTGATGGTCAACAAATGCTTAGTTTTTCAACTCCAAATCCAAAATCAGATTCTTTTTTAGATGACAAAACTGCCCAAAATGCTACATTGTCTTATGCTTATCATCAAATGTCTGCTTATAACAGAAACACAGGTTACAGTTCTGGAAGCATGCATGGAGGATTAAGTGGTGTTAGAGGACCATTTACACCTTCACAGTGGATGGAGCTGGAACATCAAGCCTTGATCTATAAGTATATTACTGCTAATGTTGCTGTACCTCATCATTTGCTTATTCCTATAAAAAAAGCTCTTGATTCTGCTGGCTTATCTAGCTACTCAACTGCACTCCTCAGACCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATAGTACAGCTACTACTAATGCTACTTCTACCATTACTCAAAGTGGTTCATCGAAGCAGATCAatgttgctgctgctgttgttgctGCTTCTCCTTCTTCATCCATCGTTGTTCCTGGTGGCAACACTGCTTCCAACACGCTTAGCTTTGCGCACCAGGAACATTCAAAGAATATGAATAACCTTATCGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAGCACTAGTGAGAGGATGCAGGATGGTCCTGCGCTTCCAATGctgcctccaacactagagttGAAACCAAAGGAAAATCACCCTTTTATGATTCAAAAACAGAACATTCCTTATGATGAATCGTCAAGGAACAATGAATTCGGCTTTGTCACTTCTGATTCATTGCTTAATCCTTCACAGAAACCGCCCACTTTGCTTGGAACCCGAGCCTTTGGTTCATCGTCGCAGGATCCTACAAACAGAGACACGGGCTCTCAAAATTCCCTTAGGCATTTCATTGATGACTTTCCCAAAACACATTCCGATCATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAACTTGACATGCAGTCGGATAGGGTACAACTATCAATTTCAACACCAATGACTTCCTCGGACTTCATGTCGTTCACTTCCTCGGGAACCAATGAAAAGCTCACACTTTCGCCTCTTAGGCTATCAAGGGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAATAGTACTCTCAATAACAACAATGAATCATCAAACCCTAGTACTAATGCTGCTAGTAGACAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTCGGTGAAGTTCTTCATCTTAGTAGTACTATTGCCTACAATGCAAACGATGATCACTACGGTGGCGGCGGTGGCAGCAACAACAACTCGGCGGCTCTAAATTTAATGACTGATGGTTGGGACAATCACAATAGTCCTCCGATGGGATCATCACCAACCGGGGTGCTTCAAAAGACCGCATTCGGATCACTTTCCAATAGTAGCGCCGGTAGTAGTCCAAGGGCCGAGAACAATAAGACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACACTTGGTAATAATGCTTCCTTTACTCCTTAG 1965 0.4107 MDLGGVSLDGLVSSDPEQKNKWYNGSGLLKQERSGTCTEDELRSFKLAKTTTDQQQQQRNNSVSLLRSNATTMFSDGQQMLSFSTPNPKSDSFLDDKTAQNATLSYAYHQMSAYNRNTGYSSGSMHGGLSGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIKKALDSAGLSSYSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNSTATTNATSTITQSGSSKQINVAAAVVAASPSSSIVVPGGNTASNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNSTSERMQDGPALPMLPPTLELKPKENHPFMIQKQNIPYDESSRNNEFGFVTSDSLLNPSQKPPTLLGTRAFGSSSQDPTNRDTGSQNSLRHFIDDFPKTHSDHHNRSGGFSWPELDMQSDRVQLSISTPMTSSDFMSFTSSGTNEKLTLSPLRLSREIDPIQMGLGVGNSTLNNNNESSNPSTNAASRQANWIPITWESSMGGPLGEVLHLSSTIAYNANDDHYGGGGGSNNNSAALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNASFTP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00480 654 MobiDBLite consensus disorder prediction 587 635 - -
Tsu01g00480 654 Pfam QLQ 135 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu01g00480 654 PANTHER - 17 632 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tsu01g00480 654 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g00480 654 ProSiteProfiles QLQ domain profile. 135 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu01g00480 654 ProSiteProfiles WRC domain profile. 204 248 IPR014977 -
Tsu01g00480 654 MobiDBLite consensus disorder prediction 235 278 - -
Tsu01g00480 654 MobiDBLite consensus disorder prediction 248 278 - -
Tsu01g00480 654 PANTHER GROWTH-REGULATING FACTOR 9 17 632 - -
Tsu01g00480 654 MobiDBLite consensus disorder prediction 396 435 - -
Tsu01g00480 654 Pfam WRC 205 247 IPR014977 -
Tsu01g00480 654 SMART QLQ_2 134 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00480 Tsu-Chr1 4134537 4139016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00480 25 612 GRF Transcription Factor Family AT2G22840 40.098 1.49e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu01g00480 WRC 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00480 - - cam:101496763 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00480 01 4134537 4139016 Tsu01g00480 01 4134537 4139016 ECH