Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00477 ATGGCAAATAATCCTCAACAACCTTCTAATATTCAGTTTCGGCCAGTGATTCATCCACAGCAAGGGCAACCATTTGTTCCAATGACTTCACAACAATTCGGACATGCAGGGCATGCTGTTCCTTCGTCTAACGCCGGGATGCCTGTTATTCAGGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGACTCAAAGACAAATTCAGCCTGGTCATCCTGTTTCTTCATCACAGGGTATACCTATGCCATATATTCAAACAAACAGGCCACTGACATCTGTTCCACAACATGCACAGCAAGCTGTTCCCCACATAAGCAATCATATGCCTGGCTTGTCAGGAGCACCTCCTCAATCTTCATATACAtTCGCACCATCTTATGGTCAGCAGCAAGACAATGCTAATGCATTGCCTCAATACCAGCATCCACCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGTCGTCCTCAGTACCCCAAAGTGCTGCAGCTGTTACGCCCGTACAGCCGGCAGGAGTTCAATCATCTGGTACTGCATCAAATGATGCTGCAACTAATACCACTAACCAGAACTCTGCATCTGATTGGCAAGAGCATGTTGCTGGTGATGGGAGAAGATATTACTACAACAAGAATACAAGGCAATCTAGCTGGGAAAAACCTTTAGAGTTGATGTCACCTCTTGAGAGGGCTGATGCATCAACTGTCTGGAAAGAGTTCACTTCTTCAGACGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACATGGACAATACCAGAAGAACTCAAGCTGGCTCGTGAGCAGGCACATAAAACTATTAGCCAGGGGATGGTGTCAGAAACAAGTGATACATCCAATGCTGCGGCCTCCTCTGCTGCAGCATCAACACCAGCTAATGCAGCTAGTTCCACCACTTTGACATCTAACGGTTTTGCTTCAAGCCCATCTTCTATTACACCAATTGTAGCTACTGATCAGCAACGGTTGGTTTCTGGATTATCGGGGACCTCTGTTTCCCATTCTGTAGTTACTTCAAGTACCACAGGAGTTGAACCAAGCACTGTTGTAACTGTGAGCACTGCACCTACAACAGTTGCAGGAAGCTCAGGAGTAGCAGCCAGCTCACTTGATTCAAAAATTCCATCCATTGTTGAAAATAAAGCAAAAACTCATGATTCTACTTCTTCTGTCAATGGAGCACCTCTTCAAGATATGGAgGAAGCCAAAAGAGGACTTCCTGTGGTTGGGCCAACTAATGTGACTCCTTCAGAGGAGAAGACCAATGATGGTGAAACTTTTATATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTCATTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAATGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTCAATGAGTATTTGGGCCAAAGGAAGAAGATAGAGGCTGAAGAGAAGCGCATAAAACAGAAAAAAGCCCGCGAAGAATTCACAAAGATGTTAGAAGAGTGCAAGGAGCTAACATCATCCACAAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCTGTTGAAAGAGTAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGgaaaaggaaaatgctGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAATTTTTGGAATCCTGTGATTTTTTGAAGgtgAATAGTCATTGGAGAAAAATCCAAGATCGGCTAGAGGATGATGATAGATACTTACTACTTGAAAAACTTGACCGCTTGCTTGTTTACCAGGACTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAAAAAAGGATACAGAAGGAACGAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTGGAAGAACATATTGCTGATGGAGTTCTTACTGCTAAAACACAATGGAGAGATTATTGCTCGAAGGTGAAAGAGTTGCCTCAATATCAAGCTGTTGCATCAAATACATCTGGTTCTACTCCGAGAGATTTATTTGAGGATGTctttgaagatcttgaaaagaAGTATCATGAAGACAAGACACTCATAAAAGACACACTGAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATTTGAGGACTTCAAGTCTGCTGTATTAGAAGAAGCTGCTTGCCAAACAATatcggaaatcaatttgaagCTTTTATTTGAAGAGTTACTAGAGAGAGCTAAGGAAAAGGAAGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGACGACTTTACTAACTCGTTATATTCATTCAAGgAAATTACTACTACTTCAATATGGGAGGATTGCAAGCCACTTTTTGAGGAGACACAGGAGTACAAGTCAATTGGGGACGAAAGCTCTAGTAGAGAAATTTTTGAAGAATACATTACATACTTAAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGgccaagaaagaaaaagaaagagaagagaaagagaaacggaaagagaaggagaaaaaagagaagGACAGAGAACGtgagaaagaaaaatcaaagGAACGAAATAAGAAAGATGAATCAGATAGTGATAATCAAGACATAACTGATAGCCATGGCTATAGAGAGGAGAAGAAAAAAGATAAGGAAAAGGAAAGGAAGCATCGGAGAAGGCATCAGAGCAGTATAGATGACGTGGATTCTGAAAAAGACGAGAAGGAAGAGTCTAGAAAATCACGTAGACATGGAAGTGATCGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGATTCAGACAATGAAAGTCGGCATAAAAAACACAAGAGGGAGCACGGGGATGGTTCTAGGAGAACCGGGTTGAATGACGAGCTTGAAGATGGGGAGCTCGGCGATGATGCAGAGGTTTAG 3009 0.4045 MANNPQQPSNIQFRPVIHPQQGQPFVPMTSQQFGHAGHAVPSSNAGMPVIQGQQLQYSQQMQQLTQRQIQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAQQAVPHISNHMPGLSGAPPQSSYTFAPSYGQQQDNANALPQYQHPPQMLAPPAGQPWSSSVPQSAAAVTPVQPAGVQSSGTASNDAATNTTNQNSASDWQEHVAGDGRRYYYNKNTRQSSWEKPLELMSPLERADASTVWKEFTSSDGRKYYYNKVTQQSTWTIPEELKLAREQAHKTISQGMVSETSDTSNAAASSAAASTPANAASSTTLTSNGFASSPSSITPIVATDQQRLVSGLSGTSVSHSVVTSSTTGVEPSTVVTVSTAPTTVAGSSGVAASSLDSKIPSIVENKAKTHDSTSSVNGAPLQDMEEAKRGLPVVGPTNVTPSEEKTNDGETFIYANKLEAKNAFKALLESVNVHSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFLKVNSHWRKIQDRLEDDDRYLLLEKLDRLLVYQDYIRDLEKEEEEQKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCSKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVFEDFKSAVLEEAACQTISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNSLYSFKEITTTSIWEDCKPLFEETQEYKSIGDESSSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERNKKDESDSDNQDITDSHGYREEKKKDKEKERKHRRRHQSSIDDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPDSDNESRHKKHKREHGDGSRRTGLNDELEDGELGDDAEV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 848 1002 - -
Tsu01g00477 1002 Coils Coil 767 791 - -
Tsu01g00477 1002 Coils Coil 626 654 - -
Tsu01g00477 1002 ProSiteProfiles FF domain profile. 443 497 IPR002713 -
Tsu01g00477 1002 Coils Coil 559 588 - -
Tsu01g00477 1002 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Tsu01g00477 1002 SUPERFAMILY FF domain 504 572 IPR036517 -
Tsu01g00477 1002 ProSiteProfiles FF domain profile. 510 565 IPR002713 -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 924 948 - -
Tsu01g00477 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 192 225 IPR001202 GO:0005515
Tsu01g00477 1002 Pfam WW domain 239 264 IPR001202 GO:0005515
Tsu01g00477 1002 Pfam WW domain 196 223 IPR001202 GO:0005515
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 848 917 - -
Tsu01g00477 1002 ProSiteProfiles FF domain profile. 578 632 IPR002713 -
Tsu01g00477 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 7 997 IPR039726 GO:0045292
Tsu01g00477 1002 Gene3D FF domain 780 853 IPR036517 -
Tsu01g00477 1002 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Tsu01g00477 1002 ProSiteProfiles FF domain profile. 650 713 IPR002713 -
Tsu01g00477 1002 SUPERFAMILY FF domain 645 720 IPR036517 -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 111 198 - -
Tsu01g00477 1002 CDD WW 239 266 IPR001202 GO:0005515
Tsu01g00477 1002 Gene3D FF domain 443 498 IPR036517 -
Tsu01g00477 1002 SUPERFAMILY FF domain 786 847 IPR036517 -
Tsu01g00477 1002 SMART FF_2 443 497 IPR002713 -
Tsu01g00477 1002 SMART FF_2 578 632 IPR002713 -
Tsu01g00477 1002 SMART FF_2 652 713 IPR002713 -
Tsu01g00477 1002 SMART FF_2 785 840 IPR002713 -
Tsu01g00477 1002 SMART FF_2 510 565 IPR002713 -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 152 198 - -
Tsu01g00477 1002 Gene3D FF domain 643 724 IPR036517 -
Tsu01g00477 1002 Gene3D FF domain 499 573 IPR036517 -
Tsu01g00477 1002 Gene3D FF domain 574 642 IPR036517 -
Tsu01g00477 1002 Gene3D - 235 278 - -
Tsu01g00477 1002 Gene3D - 191 234 - -
Tsu01g00477 1002 Coils Coil 838 894 - -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 278 318 - -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 957 991 - -
Tsu01g00477 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 7 997 - -
Tsu01g00477 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
Tsu01g00477 1002 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Tsu01g00477 1002 SUPERFAMILY FF domain 439 497 IPR036517 -
Tsu01g00477 1002 MobiDBLite consensus disorder prediction 113 141 - -
Tsu01g00477 1002 Pfam FF domain 445 494 IPR002713 -
Tsu01g00477 1002 Pfam FF domain 654 709 IPR002713 -
Tsu01g00477 1002 Pfam FF domain 581 629 IPR002713 -
Tsu01g00477 1002 Pfam FF domain 512 562 IPR002713 -
Tsu01g00477 1002 SUPERFAMILY FF domain 570 639 IPR036517 -
Tsu01g00477 1002 SUPERFAMILY WW domain 226 267 IPR036020 GO:0005515
Tsu01g00477 1002 SMART ww_5 234 266 IPR001202 GO:0005515
Tsu01g00477 1002 SMART ww_5 193 225 IPR001202 GO:0005515
Tsu01g00477 1002 CDD WW 196 225 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00477 Tsu-Chr1 4113219 4124622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00477 K12821 - gmx:100806019 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00477 01 4113219 4124622 Tsu01g00477 01 4113219 4124622 ECH