Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00475 ATGGAAAAGATCTGCGTCGCCGTTAGAGTTCGTCCTCTTGTTTCCTCAGATTCCGTCAATGGAAGTTTCTGGAAGGTTGAAGATAACCGCATTTCTCTTCACAAGATCCATGGAACTCCTTTCTCTGGCTCTTCTTATGCTTTCGATCATATATTTGACGAATCTAGCACGAATTCAAGTGTTTATGAGCATCTCACTAAGGATATCATTCTCGCTGCACTCAATGGCTTCAACGGGACTGCATTTGCTTATGGGCAGACAAGTAGTGGGAAAACGTTCACGATGAATGGTTCTGAGACTGACCCAGGAGTGATTCCTAGGGCAGTCAAAGATATATTTGCAAAAATTGAAACGATGTCTGAACGGGAGTTTTTAATTCGAGTTTCCTACATGGAGATTTATAATGAAGAGATTAATGACCTTCTTGTTGTTGAAAGTCAGAAATTGCAAATTCATGAGAGTCTGGAGCGGGGAGTATTTGTTGCAGGGCTGAGAGAGGAAGTTGTCAATAATGCTGAACAAGTTTTAGATCTCATTAAAGCAGGAGAAGTGAATAGGCACTTTGGTGAGACAAATATGAATGTAAGGAGTAGCAGGTCGCATACAATATTTAGAATGGTGATTGAAAGCAAAGGGAAGGATTCCAATTCTTCCGATGATAGTTCAATAAATGACATTGTTCGAGTTTCAGTCTTGAATTTGGTAGATCTTGCTGGATCTGAAAGAATTGCAAAGACTGGAGCTGATGGAGTACGCTTGAAAGAAGGAAAATATATTAACAAGAGCTTGATGGTTCTAGGAAAtgttattaataaattaagcGAAGGTTCGAAACAAagGGGGCATATTCCATATCGTGATAGTAAATTAACACGTATTCTCCAACCTGCTCTTGGTGGAAACGCCAAAACTTCTATTATTTGCACAGTAGCACCAGAAGAGGTTCACATTGAAGAAACAAAGGGAACTCTTCAGTTTGCTAGTAGAGCCAAACGAATCACCAATTGTGTTCAAGTGAATGAGATTTTGACAGATGCAGCCTTGTTAAAGCGGCAACAATTAGAGATAGAAGAGTTACGTAAGAAACTGCAGGGATCCCATGCTGGGGTGCTTGAGCAAGAGATTCTTAAACTTAGGAACGATTTGCTGaagTATGAAATGGAGCGTGGGAAGCTTGAAATGGAACTGGAAGAAGAGAGGAAATCGCGTAATCAATGGATTAGCGAGCAAcagatgaaaattgaaaattccaGTATTGCATCGTTCTCAGTCTCAGATTGTGGGACAAATGACAATCAGGGACCAAGATATTTGAGGAGGCAAGGATTTAGGGAAGAGTACAGTGATGTTAATAGTACATCTCATGGAGATATATTTAAATCTCCCTGTTTAAAGACAGCTAGTGCTTTTGTTGTCAAGCGATCAAAGTATTCAATATTGCCAGACAGTAGTCCTCTTCGAGATAGTAGTCCGCTTCCAGATGCTTTCAACAATGTCGCTGATGAAGATACGTGGTTGAAAATGAACAATGGTTATGTTGCAAACCTTGATTCACCTCAAACGACTCCCACTCGAAACTTTCAATCATTCCCACCAAGTGATACAACTCCTGGTTGTGCAATTCAAGTTGAAAAGTATGAACGAGAAGTTCAAGATTTGAGAAGACAACTAGAGCTAGCAAATGAAAAGATAAATGAACTGGAGAGAAAGCATTCAGAGGAAGTATTGTCAAGCAAGCAATTAATAGGCGAGATCCCAGACAATcaacaagaaacaaaactaATTCAGGAATTGCCTCTAAGGTTATCGGAGTCAGTGGAAAACTATAAAGATAGCTTTGAGGAGGTTTTATCAGCAATGCAGAGATTTGCATTGGATGGAAAATTCTCAACTGAAAAAATGCTTTCAACCATGAGTGACATTGGTGCACAGCTATTTGCAACTTTGGAAGGCCAGCTTACAATGTTTACGAACGGTGAAAGGTCTTCCACTGCGAACTATGCTTTGATCCAAGAACCACAAAAAGAGTTTCAAGAGAGGCTGAAGAATATAATAACATCATTGGAGTTATCAGAAAGctcaataacaaaaaatcaagACAGGACTCCTTTGTGCAGCTGTGAACACAAGGACTCTGGTTTGGGAGGAGAAATTGCTTCCTCAAAGGATGCTTTTAATGAAAGATATGAAAGCTTGGAAAAGAAGTTATTACTTTTGAAGAACGAAAGAGACTCTTTGTTACACAAGTTCACTGAATCTTCTGATAAACTTGCAACTGTTGCAatggaaaaggaaaatgttttgaAAGATTTAAACACTGAAGTACGTAGAAGGAAAAAGCTAGAAGTGGAGGTTAAGCAATTTACTTCAGCTTTTGTCTGTCGTCAGAAATCACTTATTTCTTTGCGTAGTGACCTTAAGACCAAAATTGAGAAATGGAAAGCTCAGACACCAATTTCAGTGCCCAAGTCTTTTGGGTGTGAGGACTAA 2490 0.3811 MEKICVAVRVRPLVSSDSVNGSFWKVEDNRISLHKIHGTPFSGSSYAFDHIFDESSTNSSVYEHLTKDIILAALNGFNGTAFAYGQTSSGKTFTMNGSETDPGVIPRAVKDIFAKIETMSEREFLIRVSYMEIYNEEINDLLVVESQKLQIHESLERGVFVAGLREEVVNNAEQVLDLIKAGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDSNSSDDSSINDIVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMVLGNVINKLSEGSKQRGHIPYRDSKLTRILQPALGGNAKTSIICTVAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQQLEIEELRKKLQGSHAGVLEQEILKLRNDLLKYEMERGKLEMELEEERKSRNQWISEQQMKIENSSIASFSVSDCGTNDNQGPRYLRRQGFREEYSDVNSTSHGDIFKSPCLKTASAFVVKRSKYSILPDSSPLRDSSPLPDAFNNVADEDTWLKMNNGYVANLDSPQTTPTRNFQSFPPSDTTPGCAIQVEKYEREVQDLRRQLELANEKINELERKHSEEVLSSKQLIGEIPDNQQETKLIQELPLRLSESVENYKDSFEEVLSAMQRFALDGKFSTEKMLSTMSDIGAQLFATLEGQLTMFTNGERSSTANYALIQEPQKEFQERLKNIITSLELSESSITKNQDRTPLCSCEHKDSGLGGEIASSKDAFNERYESLEKKLLLLKNERDSLLHKFTESSDKLATVAMEKENVLKDLNTEVRRRKKLEVEVKQFTSAFVCRQKSLISLRSDLKTKIEKWKAQTPISVPKSFGCED 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00475 829 PANTHER CENTROMERE PROTEIN E 2 788 - -
Tsu01g00475 829 ProSitePatterns Kinesin motor domain signature. 230 241 IPR019821 GO:0003777|GO:0005524|GO:0007018
Tsu01g00475 829 ProSiteProfiles Kinesin motor domain profile. 3 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 PANTHER CENTROMERE PROTEIN E 2 788 - -
Tsu01g00475 829 Pfam Kinesin motor domain 9 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 Gene3D Kinesin motor domain 1 365 IPR036961 -
Tsu01g00475 829 Coils Coil 543 577 - -
Tsu01g00475 829 Coils Coil 368 402 - -
Tsu01g00475 829 Coils Coil 722 749 - -
Tsu01g00475 829 PRINTS Kinesin heavy chain signature 76 97 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 PRINTS Kinesin heavy chain signature 191 208 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 PRINTS Kinesin heavy chain signature 231 249 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 SMART kinesin_4 1 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu01g00475 829 CDD KISc_CENP_E 3 333 - -
Tsu01g00475 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00475 Tsu-Chr1 4102360 4108609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00475 2 395 Miscellaneous Gene Families AT4G39050 45.250 1.23e-93 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00475 K11498 - gmx:100804944 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00475 01 4102360 4108609 Tsu01g00475 01 4102360 4108609 ECH