Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00470 ATGGCAGTGTTATCGGAAATAGAAGAAGATCAACTCGACGAAGAACCAGGCGAAGTCATCGAATCAGCACCGCCTCAAAAACTCGGCGAAGAAAGACAACTCACTTCCAACTCCCCAATCAAAAAGAAGCTCCTCAAACGCGGCCACGCTTGGGAAACCCCCAATTTCAACGATCATGTTActgTTCACTATGTTGGAACTTTGTTGGATGGAACTAAGCTGGGTTCTACTAGGGATTCTGATTCTCCTGTCACATTTACACTTGGCCAAGGTGAAGTGTATGCTGGATTGGATGATGGTATTGTCACCATGAAGAAAGGAGAGGTGGCATTGTTCACATTACCTGCTGTTGAGTCTGAAGGCATTCCACAAGACTCCAACTCAGTTGTGCAGTTTGAGGTGGAACTCGTTTCGTGGATCACGGTGGTGGATGTTTGCAAAGATGGCGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGATCGGCCTGGTGATCTTGATGAAGTCCTTGTGAAGTATCAGGTGTCACTAGTAGATGGCACTGTTGTTGCAGAAACGCCGGAAGAAGGAGTTGAATTCTATTTGAAGAATGGTCATTTTCTTCCTAGATTGCCGAAAGTGATCATGACTATGGCAAGAGGAGAGAAGGCTGAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTAGCAGCGGTTTCAATTCAGTTCCGCCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTAATTGGTGACTCAATGGTGATTAAGAAGATTTTGAAAGAAGGGGAGGGTACTTTCACAGCCAACGAGGGGGCAAATGTTACTGTCAACTACACAGCTATGCTCGAAGATGGCACTGTATTTGAGAAAAGAGGAGTCGGTGAAACACAGCCCTTGAAATTCATAACTGATGAAGAACAAGTTATTACTGGTCTAGACCGAGCAGTGGCAACAATGAAGAAGGGTGAGAGGGCCATAATTAGTATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACAAGAACTGGCTATTGTGCCACCGGGCTCAAAAGTAGTCTATGACATTGAAATGACTGAATTTATTAAGGAGAAAGCACCATGGGAGttaaataataatgagaaatttgaggtgGCTGGGAGGAAGAAAGAAGAAGggaatttattatttaaaagtgGCAAATATCAGCGGGCAGCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCTAGCTAAATCGTTGAGAATTTCTTGCTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTGAATGACTTTCCAGGAGCAATCAAACTATGTACTCAGGTGCTTGATGTTGAGTTTCACAATGTGAAAGCTTTGTATAGACGAGCGCAAGCATACATAGAGACCGGAGACTTTCTCTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAGAACAGGGAGGTAAAGGTACTAAAGATGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAACTGTATGAAAATATGTTTGCAAGGAAACCAAAGAGATTGAAAGTTGTGAAAGAAGATGAGGTGGTGAAAATGGAAACGGACAATGTTGGTGACAGCGCAGCGCCTTCTGATGGTGGTTTAAATATCGACTCTCGTTGA 1743 0.4223 MAVLSEIEEDQLDEEPGEVIESAPPQKLGEERQLTSNSPIKKKLLKRGHAWETPNFNDHVTVHYVGTLLDGTKLGSTRDSDSPVTFTLGQGEVYAGLDDGIVTMKKGEVALFTLPAVESEGIPQDSNSVVQFEVELVSWITVVDVCKDGGIIKKIMEKGKGNDRPGDLDEVLVKYQVSLVDGTVVAETPEEGVEFYLKNGHFLPRLPKVIMTMARGEKAELIVQPQYAFGEKGREASSGFNSVPPDSVLHVNIELVSFKPVINVIGDSMVIKKILKEGEGTFTANEGANVTVNYTAMLEDGTVFEKRGVGETQPLKFITDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVRQELAIVPPGSKVVYDIEMTEFIKEKAPWELNNNEKFEVAGRKKEEGNLLFKSGKYQRAAKKYDKAADFVSEDGSFGDDEQKLAKSLRISCWLNGAACCLKLNDFPGAIKLCTQVLDVEFHNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVKVLKMKLKQLQADSDKKDAKLYENMFARKPKRLKVVKEDEVVKMETDNVGDSAAPSDGGLNIDSR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00470 580 PANTHER PEPTIDYLPROLYL ISOMERASE 261 378 - -
Tsu01g00470 580 PANTHER PEPTIDYLPROLYL ISOMERASE 5 265 - -
Tsu01g00470 580 PANTHER PEPTIDYLPROLYL ISOMERASE 376 559 - -
Tsu01g00470 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 259 IPR001179 GO:0003755
Tsu01g00470 580 SUPERFAMILY TPR-like 392 541 IPR011990 GO:0005515
Tsu01g00470 580 Gene3D - 260 383 IPR046357 GO:0003755
Tsu01g00470 580 Gene3D - 5 141 IPR046357 GO:0003755
Tsu01g00470 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 261 378 - -
Tsu01g00470 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 265 - -
Tsu01g00470 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 376 559 - -
Tsu01g00470 580 SUPERFAMILY FKBP-like 266 396 - -
Tsu01g00470 580 MobiDBLite consensus disorder prediction 561 580 - -
Tsu01g00470 580 SUPERFAMILY FKBP-like 125 259 - -
Tsu01g00470 580 SUPERFAMILY FKBP-like 34 141 - -
Tsu01g00470 580 SMART tpr_5 396 429 IPR019734 GO:0005515
Tsu01g00470 580 SMART tpr_5 445 478 IPR019734 GO:0005515
Tsu01g00470 580 SMART tpr_5 479 512 IPR019734 GO:0005515
Tsu01g00470 580 Gene3D - 142 259 IPR046357 GO:0003755
Tsu01g00470 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Tsu01g00470 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 375 IPR001179 GO:0003755
Tsu01g00470 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 137 IPR001179 GO:0003755
Tsu01g00470 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Tsu01g00470 580 Coils Coil 515 535 - -
Tsu01g00470 580 MobiDBLite consensus disorder prediction 1 39 - -
Tsu01g00470 580 Gene3D Tetratricopeptide repeat domain 384 539 IPR011990 GO:0005515
Tsu01g00470 580 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00470 Tsu-Chr1 4018804 4025125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00470 27 552 Calmodulin-binding Proteins AT3G25230 53.558 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00470 K09571 - gmx:100798382 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00470 01 4018804 4025125 Tsu01g00470 01 4018804 4025125 ECH