Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00469 ATGGATAAAATCAAAGTTAGGTATAAGCTTAACAATGAAGATTGGAAACCATCACCAATTACAGCTTTAGCTACCAGTATTGACGGCACTCGTGTTGCTGCATCACGTGAAGATGGCTCGTTAGAGCTTTGGTTTGTTTCTCCTGGTACAATCGGTTGGCACTGTCAATTGACAATTCATGGTGACCCTAACAGGATTGTATCTTCGTTAATTTGGTGTCCTGGTGGTTCAACTTCAAATGGATTTCCGCATGGTCGATTATTTTCATCAAATATAGATGGTTCTGTTTCTTTTTGGGATCTCTATAACTTGAAGCAAACGATGGTGCTTGAATCTAATGGTGTCTCAATCTGGCAAATGGCTGTGACACTGGCTAAAAGTGACGTTGGTGAAACTAATGGTGTTCACATTGGGAATGGTTATTTGAAGAGACTTCACGGTTCTGATGACCACGAAAACAGCGAAAGTGATGAAGATTCTGATTCCGATTCGCCTGATGTTATCAAGCAATCCAGTTTAATGGACCCAAGAGTAGCAGTTGCTTTTGATGATGGATCTGTTAGAATTTACACTATATCTGATGCTaatgaatttatatatttaaaatccATGAGCCGGGTCCAAGGACGGGTTTTAAGTGTGGCTTGGAGCACGGATGCTAAATTCATATTTTCAGGAAGTAGTGATGGGATAATACGAATCTGGGATGCCAAATCAGGTATTGAAGCCCATCATATTCCAGCTAGACTGGGTGTGGACAGCGGAAATGAACTTTGTATATGGTCGTTACTATATTTAAGGTCTGGAACACTTGTTAGTGGAGACAGCAGTGGGAGCGTCCAGTTTTGGGACTGCAAACAAGGAACTCCCTCTCAAGACCCTATCACTAAACACAAGGGAGATGTACACGCTCTGGCAGCTGCCCCTGATCACAATATGGTGTTCTCTGCCGGTTCTGATGGAAAGgttgttctttATAAGCAGTCTTCATCAATGATAGAGAAAGAGAATTGGGTCTACGTTGATTATCAAAAAAAGCATACACATGATGTCCGAGCTTTGACTGTTGCTGTGCCGATAAGTCAAGAAGATACTTTGCCGGATGAAAGGATTAAAAGAGCTCGCCATGCAGAAAAGCCAGATGTTTCTAATTACCACAAGTGGGCTCATTCGGGGCATCCCATGCTTATCTCAGCAGGAGATGACACACAACTTTATGCATACCCTGCAAAAGAATTCACCGGGTTTAAACCTCATTGTATCTGTCCTGTGCCTCAGAGAACACCCATTCATGTAGCACTTAATACTTCCTTCAATCAATCACCAATGCTTTTACTGCAGTCTTCACGTTGGATAGAAGTTCGTTTGCTACATCTCAAAAATGTTCGTAGAACTGGAGACTATGCAAAGGCTGAAAGTATTGGCCGTTTCAAGATTAAGGCATCTCGTAAGATAATTTGTAGCACCCTTGCCAATTCAGGGGCGTTTTTTGCATATTCTGATAATGAAAAGCCTAGTCTTCTTAAAGTGAAGAGATCCGAAACAGGAAAAATTACATGGAGTTTTGGTAAAATGAAGCTTCCTGAGAGATTACCGTTTGCCCATTCAATGATTTTTTCTGATGACTCCTCTTGGTTGATAGTAGCTGGCCATGATAGAAGGATATATGTCGTGGATGCCAATAGCTCGGAACTAGTACACACTTTTACACCATTTCGTGAACCTCAAGATGATGGATTATCACCGGCGGAACCACCCATCACAAGATTGTTTACTAGTTCTGATAGGCAGTGGTTGGCTGCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAAACACTAAGGCAGCACTGGTTCATTTCAAGAATGGATGGTGCCTCTGTTACAGCTGGAGGATTTCCTCCCCAAAACAACAATATACTGATAGTTACAACTTCTTCAAATCATGTGTATGCATTCGATGTAGAGGCCAGACAATTGGGGGAATGGTCGATGCGGAATACATTTGTTCTGCCTAGGAGATTTCATGAGTTTCCTGGTGAAGTCATTGGGCTCTCATTCCCTCCCTCGTCAAATTCATCTACGGTTATGGTTTATAGCTCCAGGGCAATGTGCTTGATTGACTTTAGCTTACCGGTGCAAAATGAAGGTGAAATCTTACATACTCGAGATTCAATGATCAAGAATTCACCGAATTTAAACCTTAAGAAAAGGACTAAATTTAAGAAGAACTTTGAAAACATTGAAGTTTTGCCGttagaaaaacaaaactttgaAGTTTCAACGTTAGAAAAAGACCGTGTCTTATATCTTACTCATATTTCAAATAATCGCTTCTTTATGATTGAAAAACCGTGGTCAGATGTGGTGAATAGCTTAGAAGTTCAACCAGTTCACAGACATATTTATGGAACATAG 2424 0.4026 MDKIKVRYKLNNEDWKPSPITALATSIDGTRVAASREDGSLELWFVSPGTIGWHCQLTIHGDPNRIVSSLIWCPGGSTSNGFPHGRLFSSNIDGSVSFWDLYNLKQTMVLESNGVSIWQMAVTLAKSDVGETNGVHIGNGYLKRLHGSDDHENSESDEDSDSDSPDVIKQSSLMDPRVAVAFDDGSVRIYTISDANEFIYLKSMSRVQGRVLSVAWSTDAKFIFSGSSDGIIRIWDAKSGIEAHHIPARLGVDSGNELCIWSLLYLRSGTLVSGDSSGSVQFWDCKQGTPSQDPITKHKGDVHALAAAPDHNMVFSAGSDGKVVLYKQSSSMIEKENWVYVDYQKKHTHDVRALTVAVPISQEDTLPDERIKRARHAEKPDVSNYHKWAHSGHPMLISAGDDTQLYAYPAKEFTGFKPHCICPVPQRTPIHVALNTSFNQSPMLLLQSSRWIEVRLLHLKNVRRTGDYAKAESIGRFKIKASRKIICSTLANSGAFFAYSDNEKPSLLKVKRSETGKITWSFGKMKLPERLPFAHSMIFSDDSSWLIVAGHDRRIYVVDANSSELVHTFTPFREPQDDGLSPAEPPITRLFTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRMDGASVTAGGFPPQNNNILIVTTSSNHVYAFDVEARQLGEWSMRNTFVLPRRFHEFPGEVIGLSFPPSSNSSTVMVYSSRAMCLIDFSLPVQNEGEILHTRDSMIKNSPNLNLKKRTKFKKNFENIEVLPLEKQNFEVSTLEKDRVLYLTHISNNRFFMIEKPWSDVVNSLEVQPVHRHIYGT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00469 807 Gene3D - 492 724 IPR015943 GO:0005515
Tsu01g00469 807 SUPERFAMILY Nucleoporin domain 392 573 - -
Tsu01g00469 807 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Tsu01g00469 807 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 6 807 IPR044622 GO:0010073|GO:0035266
Tsu01g00469 807 Pfam WD domain, G-beta repeat 296 326 IPR001680 GO:0005515
Tsu01g00469 807 Pfam Anaphase-promoting complex subunit 4 WD40 domain 178 248 IPR024977 -
Tsu01g00469 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 240 - -
Tsu01g00469 807 SMART WD40_4 291 327 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 3 45 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 524 559 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 197 236 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 103 191 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 52 100 IPR001680 GO:0005515
Tsu01g00469 807 SMART WD40_4 246 284 IPR001680 GO:0005515
Tsu01g00469 807 SUPERFAMILY WD40 repeat-like 176 662 IPR036322 GO:0005515
Tsu01g00469 807 Gene3D - 159 435 IPR015943 GO:0005515
Tsu01g00469 807 Gene3D - 5 142 IPR015943 GO:0005515
Tsu01g00469 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Tsu01g00469 807 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 14 240 IPR011044 -
Tsu01g00469 807 MobiDBLite consensus disorder prediction 147 169 - -
Tsu01g00469 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00469 Tsu-Chr1 4007412 4012996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00469 32 286 Acyl Lipid Metabolism Gene Families AT3G18860 22.300 1.27e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00469 K14548 - gmx:100797494 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00469 01 4007412 4012996 Tsu01g00469 01 4007412 4012996 ECH