Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04972 ATGGCAAACTCGGAGAAGGTCGATGCTGGAAACCTCTCGGATGCAGAGGCATGCACTTCTATTATCCACCACTATTCAAAGACAACAAACACTGGATGCGTTTCCATTGACGATGAAAACATCATTCTAAATCCTCAGTTTGAAGATGGCCTAAATAATTGGACTGGAAGAGGCTGCAAGATTACATTACATGATTCCATGGCAGATGGGAAAATCCTTCCAAAATCCGGGAAATTCTTTGCATCTGCAACCGAACGCACACAAAGTTGGAACGGAATTCAGCAAGAGATCACTGCACGAGTGCAGCGCAAGTTTGTGTATGAAGTCACTGCTTTAGTTCGAATATTTGGGAACAATGTCACTACTTCTGATGTACGCGCTACGTTGTATGTTCAAAAACCAGATTTTCGAGAGCAATATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGACACAAATGCAGGGAAAGTTCCTTCTAAATGATTCTCCCTCAAAAGTAATTGTTTATTTGGAAGGTCCTCCTGCAGGCACTGACATTCTTCTAAATACTTTAGTTATAAAACATGCAGCTAAAACACCGCCGTCATCACCTCCGGATTTTGAGAATGTTGCTTTTGGTGTTAATATAATTGAGAACAGTAATCTGGATAATGGCACCAATGGATGGTCTCCTCTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTGTAATTCCGCCAATGGCAAGAGACTCTCTTGGTCCTCATGAATCCCTTAGTGGACGCTACATTCTTGTAACGAACCGCACACAAACATATATGGGTCCTTCGCAGACAATCACTAAGAAATTGACACTCTATTTAACTTATCAAGTATCTGCTTGGGTTCGGATTAGTTCCGGATCACATGGACCTCAGAATGTGGGTATTGCCCTTAGTGTTGATGGCCAGTGGGTCAATGGAGGGCAAGCCGAAGTTGCTGACAGCAGATGGCATGAAATCGGTGGTTCGTTTAGAATTGAAAAACAGCCATCTAATGTTTTTGTTTATATTCAAGGTCCTGTTTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGGCAGGCAAGGTTTAGATATTTAAGGAAGCAGACAGACAAGATCCGTAAGCGTGATGTTACATTAAAATTTTCCGGGTTGGATACAAGCGAGTATACCTTTGTGAAAGTTAGACAAATACAGAACGATTTTCCAATTGGATCATGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTCGGTAACGAGTTGAAATGTACAAAGATAGACATTCGCGGACATTGTATCTTCTGGGAAGTGGATGGCAATGTGCAGCAATGGATCAAATCACTTAATAAAAATGATTTAATGGCAGCTGTCCAAAACCGGTTAACTGGTTTATTGACTCGCTACAAAGGCAAGTTCAGGCACTATGATGTTAACAATGAAATGTTGCACGGTTCGTTTTATCAAAACAGACTAGGTAAGGATATAAGGCCAAACATGTTCAAGACTGCACACCAATTAGACCCATCTGCTACCTTATTTGTAAATGATTATCATATCGAAGATGGATGCGACACAAATTCATCTCCGGAAAAATACACACAACAGATACTTGATTTGCAAGATCAAGGTGCCCCGGTTGGAGGAATTGGAATTCAAGGTCACATTGATAGTCCTGTTGGGCCTATTGTTTGCTCAGCGCTCGATAAGTTGGCTACTCTCGGTCTACCAATCTGGTTTACCGAGCTTGATGTGTCTTCCACTAATGAATATATTAGAGGCGATGATTTGGAAGTTATGTTGCGCGAAGCTATGGCACACCCTGCCGTAGATGGTGTGATGTTATGGGGATTTTGGGAATTGTTTATGAGCCGCGACAATTCACATTTGGTGAATGCAGAAGGTGAAATAAATGAAGCTGGGAGAAGATTTCTTGATCTTAAAGAAGAGTGGTTATCTCACACTCATGGTCATGTTGATGAGCAAGGAGAATTCAGCTTTAGGGGATTCAGTGGTTTGTACAATGTGGAACTTGTTACATTTGAAAAGGAAATTTCAAAGACATTTGTTGTTGATAAGAGTGACTCTTCATTGGTGATATCAATTGACTTGTAA 2187 0.4079 MANSEKVDAGNLSDAEACTSIIHHYSKTTNTGCVSIDDENIILNPQFEDGLNNWTGRGCKITLHDSMADGKILPKSGKFFASATERTQSWNGIQQEITARVQRKFVYEVTALVRIFGNNVTTSDVRATLYVQKPDFREQYIGIANVQATDKDWTQMQGKFLLNDSPSKVIVYLEGPPAGTDILLNTLVIKHAAKTPPSSPPDFENVAFGVNIIENSNLDNGTNGWSPLGNCTLSVGTGSPRVIPPMARDSLGPHESLSGRYILVTNRTQTYMGPSQTITKKLTLYLTYQVSAWVRISSGSHGPQNVGIALSVDGQWVNGGQAEVADSRWHEIGGSFRIEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLRKQTDKIRKRDVTLKFSGLDTSEYTFVKVRQIQNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKCTKIDIRGHCIFWEVDGNVQQWIKSLNKNDLMAAVQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQNRLGKDIRPNMFKTAHQLDPSATLFVNDYHIEDGCDTNSSPEKYTQQILDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLATLGLPIWFTELDVSSTNEYIRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNSHLVNAEGEINEAGRRFLDLKEEWLSHTHGHVDEQGEFSFRGFSGLYNVELVTFEKEISKTFVVDKSDSSLVISIDL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04972 728 Coils Coil 725 728 - -
Trre5g04972 728 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 599 609 IPR031158 -
Trre5g04972 728 SUPERFAMILY Galactose-binding domain-like 38 192 IPR008979 -
Trre5g04972 728 PANTHER GLYCOSYL HYDROLASE 39 191 IPR044846 GO:0004553|GO:0005975
Trre5g04972 728 Gene3D Glycosidases 399 683 - -
Trre5g04972 728 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 400 671 IPR001000 GO:0004553|GO:0005975
Trre5g04972 728 Pfam Carbohydrate binding domain 211 352 IPR003305 GO:0016798
Trre5g04972 728 Pfam Carbohydrate binding domain 40 177 IPR003305 GO:0016798
Trre5g04972 728 SUPERFAMILY (Trans)glycosidases 404 678 IPR017853 -
Trre5g04972 728 SMART glyco_10 435 672 IPR001000 GO:0004553|GO:0005975
Trre5g04972 728 Coils Coil 654 674 - -
Trre5g04972 728 Gene3D - 207 366 - -
Trre5g04972 728 Gene3D - 35 192 - -
Trre5g04972 728 FunFam Glycosyl hydrolase family 10 protein 35 191 - -
Trre5g04972 728 PRINTS Glycosyl hydrolase family 10 signature 567 579 IPR001000 GO:0004553|GO:0005975
Trre5g04972 728 PRINTS Glycosyl hydrolase family 10 signature 453 465 IPR001000 GO:0004553|GO:0005975
Trre5g04972 728 PRINTS Glycosyl hydrolase family 10 signature 535 546 IPR001000 GO:0004553|GO:0005975
Trre5g04972 728 SUPERFAMILY Galactose-binding domain-like 209 369 IPR008979 -
Trre5g04972 728 Pfam Glycosyl hydrolase family 10 450 642 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04972 Trre-Chr5 51392954 51396211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04972 34 728 Glycoside Hydrolase AT1G58370 70.263 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04972 - - gmx:100784250 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04972 5 51392954 51396211 Trre5g04972 5 51392954 51396211 ECH
Trre1g00464 1 3470095 3474013 Trre5g04972 5 51392954 51396211 PCT