Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02027 ATGGCTTCTTCTTTACCACTTTACCAATCAACACCACCATGCTTCTTCTCAAAAACCCAGTTTAAAGGTTTGCGCCATGACTATTTATGGCGACCCAATTACTCTTTTGGCTCTTCTGTTGAACACAAAGTACAGCCTGTTAAAGCAGTTTCTGTTGAAGCTGCTCAATTTCCATTGCTTCAGCCTCCTAAGGTTGATGATTCAGCTCCTGAGTTGGAGCCTGTGGATCCTGATTTCTACAGGATAGGATACGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTCGAACCTCTTCGTCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCCTTGGTCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGGATTTAAGATTAGCATGCCTTCTCTTGTTCTCATTTGACTGCAAAGACAACTTTTGGCAGTATTACGGCGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTAAAGTGAGAATTCAGCAACAGCGAGCCTTAGAATTCTGGGAGAAGAATTGGCATAGTGGTGTGCCTCTAAAAGTAAAACGTCTTGCTCGTGAACCACAAAGGTTTATTTGGGCAGTAGGAATTGCACAGTCACGATGTATCAATATGCAAATGAGAATGTGTGCACTAACTCAAGAGGCAAATATGTTGATTCCTTATGCCGATATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTAGAAAGGGAGATGAGATGACAGTTGATTACATGAGTGCGCAGAAGAATGACATGTTAATGCTAAGATATGGATTTTCATCGCCAGTGAATCCTTGGGATGTGATTAACTTCTCAGGCAATGCACGAATCCATTTGGATTCCTTCTTGTCAGTCTTCAACATATCTGGCCTACCTGAAGAGTATTATCGTAACGAAGTTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCACGAACATTGCCAACATGGTCAGACGGAGATGTTCCTCCAATCCCAAGTGAAGAAAGGAAGGCGGTGAAGGCATTACAACAAGAATGCAAAAAAATGCTCGCAGAATTTGCTACCACCTCTAAGCAAGACCAGAAATTATTAGATGCATCGCCAGAAGCTAGAAGAACTCTTGAAGCTGCAATAAAGTATAGATTGCACCGAAAATTGTTGATAGAGAAAATTATTGTAGCATTGGAGATTTATCAAGAACAAATACTGTTTTGA 1455 0.4089 MASSLPLYQSTPPCFFSKTQFKGLRHDYLWRPNYSFGSSVEHKVQPVKAVSVEAAQFPLLQPPKVDDSAPELEPVDPDFYRIGYVRSMRAYGVDFKEGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLATEEELLELQDPDLASKVRIQQQRALEFWEKNWHSGVPLKVKRLAREPQRFIWAVGIAQSRCINMQMRMCALTQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVDYMSAQKNDMLMLRYGFSSPVNPWDVINFSGNARIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSDGDVPPIPSEERKAVKALQQECKKMLAEFATTSKQDQKLLDASPEARRTLEAAIKYRLHRKLLIEKIIVALEIYQEQILF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02027 484 CDD SET_LSMT 92 339 - -
Trre3g02027 484 Pfam SET domain 101 324 IPR001214 GO:0005515
Trre3g02027 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 69 454 - -
Trre3g02027 484 ProSiteProfiles SET domain profile. 80 325 IPR001214 GO:0005515
Trre3g02027 484 Coils Coil 419 439 - -
Trre3g02027 484 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 85 339 - -
Trre3g02027 484 FunFam Plastid transcriptionally active 14 361 481 - -
Trre3g02027 484 Gene3D set domain protein methyltransferase, domain 1 85 339 - -
Trre3g02027 484 Pfam Rubisco LSMT substrate-binding 413 465 IPR015353 -
Trre3g02027 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 336 476 IPR036464 -
Trre3g02027 484 Gene3D - 360 482 IPR036464 -
Trre3g02027 484 SUPERFAMILY SET domain 100 340 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02027 Trre-Chr3 17941696 17946220 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g02027 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02027 - - tpra:123887006 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02027 3 17941696 17946220 Trre3g02027 3 17941696 17946220 ECH