Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00467 ATGGCTTCTTCTTCTCCTCCTCCTCCGTCGCAATCTTCTTCTCCAACTCCTTCTGCTTCTTACATCACTCACCTTCCCATTGCTCCTTCTTCTCCTTCTCATTCCAGTGAGAAGGTTCTGGAAGAAGAGCAACCGCGAGTTCCGATTCATATTGTTACGAAAGCGTTTCAACTTCCTGTGGATTTTCTTGAACCTTCGCCTCAATCGAAGCTTGTTATTGGTTTTGATTGTGAGGCTGTTGACTTGTGTCGCTATGGAACTCTTTGCATAATGCAGCTTGCATTTCCTGATGCTATATACCTGGTTGATGCAATAGAAGGGGGAAAAGTACTTATCGAAGCCTGTAAGCCTGCACTTGAGTCTGATTTTGTCACAAAAGTGATTCATGATTGCAAACGCGACAGTGAGGCATTGTACTTTCAGTTCGGCATCAAGTTAAACAATGTGGTGGATACCCAGATTGCTTATTCGCTTCTAGAAGAGCAAGAAGGACAAAAGAGATTGCCAGATGACTATATTTCACTTGTTGGTCTCCTTGCAGATCCACGTTATTGTGGCTTGACACATGTTGACAAGGAAGAAGTTCGTGTACTCCTTCGACAGGACCCCAACTTTTGGACTTACAGACCTTTATCTGAACAAATGATTCACTCTGCTGCCGATGATGTCCGTTTCCTTCCCTACATTTATCACCAAATGATGGCAAAATTAAATGAAAGGTCTTTATGGCATCTTGCTGTTCGTGGTGCCTTGTACTGCCGGTGTTTCTGTGTGAACAGTAATGACTATGCTGATTGGCCGTCTCTACCTCCAATTCCAGATATGCTGAACATTGATGGAAATGGTCCCGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCTCCAGGAAAGATGGGATGCATTATTGGGAAAAAAGGGGCTTCAATTATGGCAATTAAGGAGTCTTGCAATGCTGAAATTCTCATAGGGGGTCCCAGGGGTCCACCTGACAAGGTCTTCATCATTGGACCAGTGAAGCAGGTGAAGAAAGCTGAGGCCATGTTAAGGGGTAGACTATTGCCTGTCTTCTAG 1071 0.4407 MASSSPPPPSQSSSPTPSASYITHLPIAPSSPSHSSEKVLEEEQPRVPIHIVTKAFQLPVDFLEPSPQSKLVIGFDCEAVDLCRYGTLCIMQLAFPDAIYLVDAIEGGKVLIEACKPALESDFVTKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQKRLPDDYISLVGLLADPRYCGLTHVDKEEVRVLLRQDPNFWTYRPLSEQMIHSAADDVRFLPYIYHQMMAKLNERSLWHLAVRGALYCRCFCVNSNDYADWPSLPPIPDMLNIDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMAIKESCNAEILIGGPRGPPDKVFIIGPVKQVKKAEAMLRGRLLPVF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00467 356 MobiDBLite consensus disorder prediction 15 35 - -
Trre1g00467 356 PANTHER EGALITARIAN, ISOFORM B 26 352 - -
Trre1g00467 356 Gene3D K Homology domain, type 1 290 353 IPR036612 GO:0003723
Trre1g00467 356 ProSiteProfiles Type-1 KH domain profile. 286 348 - -
Trre1g00467 356 SMART 35exoneu6 49 238 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre1g00467 356 CDD KH-I 290 349 - -
Trre1g00467 356 Pfam 3'-5' exonuclease 67 237 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre1g00467 356 CDD Egl_like_exo 61 257 - -
Trre1g00467 356 Pfam KH domain 291 349 IPR004088 GO:0003723
Trre1g00467 356 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 282 352 IPR036612 GO:0003723
Trre1g00467 356 SUPERFAMILY Ribonuclease H-like 24 265 IPR012337 -
Trre1g00467 356 Gene3D - 3 255 IPR036397 GO:0003676
Trre1g00467 356 SMART kh_6 285 353 IPR004087 GO:0003676
Trre1g00467 356 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00467 Trre-Chr1 3514385 3519149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00467 K18740 - gmx:100788577 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00467 1 3514385 3519149 Trre1g00467 1 3514385 3519149 ECH