Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00466 ATGGATTTCATGAAAGTTTTCGATCAAACCGTTCGAGAAATAAAGAGAGAGGTGAATTTGAAGGTGCTTAAGGTTCCTGAAATCGAACAGAAGGTTTTGGATGCAACTGATGATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTGCAACGGCTACCAAAAAATTTACTGAATGTCAGCTGGTTATGAATGTTCTTTGGACAAGATTGAGTGAAACTGGAAAGGATTGGCGATATGTATACAAGGCATTAGCTGTTATAGAGTATTTGGTATCACATGGATCTGAACGTGCAGTAGATGACATTATAGAACATACTTTTCAGATCTCTGCACTTTCTAGTTTTGAATACGTTGAGCCTAGTGGGAAGGATGTGGGACTCAATGTAAGGAAGAAGGCAGAAAACATTGTGGCCCTTTTGAATGATAGAGAGAAGATACATGATGTCAGAAATAAAGCTGCTGCAAATCGTGACAAGTATATTGGAGTTTCATCTAGTGGAATGACATACAAATCCGGGACACCCTCATTTAGTAGTGCGAGTTCCCATAGCAGTAATAGATATGGAGGCTTTGGTTCAGGTGGTGATAGGTTTAGTGATAGCTACGGAGACAAGGGGCGCTATGATGAAGCAAAAGTAGACAAAGATTACTCAGGAAAATCACGCTATGGTGCCTCAAGTTACGATGAAGAGAACTCCTTCAAAAAGGGTTCTGCACGGTCTGCCAGCAAAAGTAACGAGAAGATATCATCTAGATCATCAAAGTCATCTGCTAATGCAAGTTCAGTTCCTTCTCAAAGTTCAGGTGCACCTGCAAACAATACTGAGGATGACTTTGATGATTTTGATCCGAGAGGAACATCTACTAAGGCTTCAGCTGGAAGCTCAAACCAGGTTGATCTCTTTGGACAAGATTTGATTGGTGACTTCATGGATGCTCCGACATCTGTTTCTGTAGAAAAGCCAGCAACTAGTGATGTGTCTGCAGTTGATCTCTTTGCAGATGCGGCATTTGTATCAGCACCACCACATGTGGACAAAGGAGCTAGTTCTCAACCACAGGATGAAGTGGATCTCTTTTCTTCACAACCAGCTATTCCTTCAGTTACACCGACAGTTGACTTGTTTTCCATTCCTGCACCAGCTGTGCAGCCTGACAGCAAGTCGGAAAACTCTGCTCCTGTGAATAACAGCACTTTTGATCCATTTGCTTCGGTTCCACTTAATAATTTTGACGGATCTGATGTTTTTGGTGATTTTACTTCTCAATCTGATTCTGCACCTTCACAGCCCTCAACTAATGTTGTCACCGATGGTGGTGCAAGTGCTAAATCCTTGACAGAGTCTAATATTTCAACTAAAAAGGATGCTTTTCAGGTGAAGTCTGGCATTTGGGCTGAATCACTAAGCCGTGGATTGATTGACCTCAATATATCTGCTCCCAAAAAAGTATCCCTTGCAGATGTTGGAATTGTGGGTGGATTGAATGATGGATCAGATGAAAGGGAGAAGGGCCCTCCAGCTACATTTTACATGGGGAGAGCCATGGGTTCAGGATCTGGTCTTGGTATGTATGGTGGCGCTCCTTCCCAGCAAACAACGGGAGACGACATATTATCAAACTTTGGCAGCCAAAACTATCAATTTGGTGGGTTCCAAAAGTAA 1671 0.4261 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGTVLAEIATATKKFTECQLVMNVLWTRLSETGKDWRYVYKALAVIEYLVSHGSERAVDDIIEHTFQISALSSFEYVEPSGKDVGLNVRKKAENIVALLNDREKIHDVRNKAAANRDKYIGVSSSGMTYKSGTPSFSSASSHSSNRYGGFGSGGDRFSDSYGDKGRYDEAKVDKDYSGKSRYGASSYDEENSFKKGSARSASKSNEKISSRSSKSSANASSVPSQSSGAPANNTEDDFDDFDPRGTSTKASAGSSNQVDLFGQDLIGDFMDAPTSVSVEKPATSDVSAVDLFADAAFVSAPPHVDKGASSQPQDEVDLFSSQPAIPSVTPTVDLFSIPAPAVQPDSKSENSAPVNNSTFDPFASVPLNNFDGSDVFGDFTSQSDSAPSQPSTNVVTDGGASAKSLTESNISTKKDAFQVKSGIWAESLSRGLIDLNISAPKKVSLADVGIVGGLNDGSDEREKGPPATFYMGRAMGSGSGLGMYGGAPSQQTTGDDILSNFGSQNYQFGGFQK 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00466 556 PANTHER EPSIN/ENT-RELATED 4 528 - -
Trre1g00466 556 FunFam Clathrin interactor 1 18 165 - -
Trre1g00466 556 SMART enth_2 26 152 IPR013809 -
Trre1g00466 556 MobiDBLite consensus disorder prediction 173 191 - -
Trre1g00466 556 MobiDBLite consensus disorder prediction 227 276 - -
Trre1g00466 556 SUPERFAMILY ENTH/VHS domain 24 165 IPR008942 -
Trre1g00466 556 Pfam ENTH domain 27 147 IPR013809 -
Trre1g00466 556 MobiDBLite consensus disorder prediction 221 299 - -
Trre1g00466 556 Gene3D - 19 165 IPR008942 -
Trre1g00466 556 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Trre1g00466 556 MobiDBLite consensus disorder prediction 173 208 - -
Trre1g00466 556 MobiDBLite consensus disorder prediction 419 448 - -
Trre1g00466 556 CDD ENTH 28 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00466 Trre-Chr1 3506796 3512369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00466 K12471 - gmx:100809198 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00466 1 3506796 3512369 Trre1g00466 1 3506796 3512369 ECH