Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00464 ATGGCAGAAAGAATCTATGATGCAAGTTGGAGCAATGCTTCTAATATTTTGATGAATCATGACTTCTCTGATGGCCTGAACTATTGGCATCTCGTTTGCTGCAATGGCCATGTAATTTCAGCCGACGCAGGTGATCAAGTTGGAATTTCGATGGACTCGGATCAAAATTATGCTGTTATCACCAAACGAAACAAATGCTGGCAAGGTCTTGAACAAGATATCACAGACCGGATTTCCATCGGTTCCACTTACAGGGTTACGGCTTTTGTTGGAGTATCTGGCCCTTCTCAGGAATCTGCTGAAGTAAAAGCTACATTGAAACTAGAGTATGATGATTCAGCTACACAATGTTTGTTCATCGGAAGAACTTCAGTTATAAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCGATATCTGCTATACCGAATCGGGTTGCATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACTTGCTTATAAGATCAGTAGTGATCAATTGTTCCAGTCCAAATAACAAAAAGGCCACAAGCACTGAAGGATGCGTTTTTACTGAAAATGAAAACATCATAATAAACCCTCAGTTTGAGGATGGCCTGAATAATTGGTTTGGAAGATCCTGCAAGATTGTGTTGAATGATTCCATGGCAGATGGTAAAATTGTCCCAAAGTCTGGAAAATTCTTTGCATGCGCAGCAGAACGAACACAAGCCTGGAATGGAATTCAGCAAGAGATAACTGGACGCGTGCAGCGCAAGTTGGCCTATGAGATGACTGCTTTAGTTCGGATATATGGCAATAATGTCACTAGTGCCGATGTACAGGCTACTTTGTGGGTTCTAACATCAGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATACAGATTGGGTGACGCTGCAGGGAAAATTCCTTCTAAATGGTTCCTCATCAAAAGTGGTCCTTTATTTAGAGGGCCCTCCACCTGGAACAGACATTCTTGTCAATACTTTGGTTGTAAAGCATGCTGCTAAAGCAACTCCTTCAACACCACCTAACGTTGAGAATGTTGCTTTTGGAGTTAATATAATTGAGAACAGCAATCTGTTTGATGACACCAACGGATGGTTTACCCTGGGCAATTGTACTTTAACTGTTAAAACTGATTCGCCTCGTATACTTCCACCTATGGCAAGAGATTCTCTTGGACGTCACGAACTCCTAAGTGGTCACTACCTACTTGTAACGAATAGAGCACAATCTTGGAATGGTCCTGCTCAGGTGATCACTGAGAAATTGAAGCTATTTGTGACTTACCAAGTATCTGTGTGGGTTCGGATTGGTTCTGGTTCAAATAGGCAGCAGAATGTGAATGTTGTCATTAGTGCTGACAACCAGTGGATCAATGGAGGACAAACCGAGGTTTCAGATAACAGGTGGCATGACATTAATGGATCTTTCAGAATTGAGAAGCAGCCGTCAAAGGTTACAGTTTATATTCAAGGTCCTGCTTCTGGTGTGGACTTGATGGTTGCTGGACTTCAAATTTTTCCTATTGACAGACATGCGAGGTTTACATATTTGAAGAAGCGAACAGACAAGATTCGGAGGCGAGAAGTTACACTAAAGTTCTCTGGGCTAGACTCTAGCAGCTACACTAACACCACAGTGAACGTTACACAAACACGGAATGATTTCCCGATTGGAACATGCATCTGCAGATCAAACATTGACAATGAAGATTTTGTTAACTTCCTTGTGAAACACTTCAATTGGGCTGTATTTGGGAATGAGTTGAAGTGGGAAGTGACTGAGCCACAACAAGGGATATTGAATTACAAGGACGCCGATGATCTCTTAAGTATGTGTCAAGAGTACAATATCCAAACTCGTGGACCCTGCATCTTCTGGGAAGTGGACAAAGGTGTTCAGCAATGGATTAAGTCATTGAATAAAAATGATTTGATGACGGCTGTTCAAAACCGTTTAACCAGTCTTCTGACTCGCTACAAGGGTAAGTTCAATCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGGTTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGACTCGGCTGCTACATTGTTTGTGAATGATTATCATATTGAAGATGGATGCGACACAAGATCATGTCCAGAGAAATACATTCAACACATTCTGGATTTGCTAAAACAAGGTGCACCTGTTGGTGGAATTGGAATTCAAGGTCATATAAATAGTCCAATTGGTCCTATTGTTCGTTCTTCGCTTGATAAATTAGGTGTTTTAAGTTTACCTATATGGTTTACAGAACTTGACGTGTCTTCCTTGAATGAGTATGTGAGAGCTGATGACCTTGAAGTTATGCTTAGAGAAGCTTTTGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTTTGGGAGTTGCTTATGAGTAGGGACAATGCACATTTGGTGAATGCCGAAGGTGACATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTAAAACAAGAGTGGCTATCGCATAGTCATGGTCATGTTGATGAAAAAGGTCATTTCAATTTCAGGGGATTTTATGGAACTTATAATGTGGAAGTTGTGACACCATCAAAGAAAATTGCTAAGACATTTGTGCTTGATAAAGGTAACTCTCCGGTGGTTGTAAAAATTGATTTATAA 2712 0.4089 MAERIYDASWSNASNILMNHDFSDGLNYWHLVCCNGHVISADAGDQVGISMDSDQNYAVITKRNKCWQGLEQDITDRISIGSTYRVTAFVGVSGPSQESAEVKATLKLEYDDSATQCLFIGRTSVIKGSWEKLEGTFSISAIPNRVAFYLEGPAPGVDLLIRSVVINCSSPNNKKATSTEGCVFTENENIIINPQFEDGLNNWFGRSCKIVLNDSMADGKIVPKSGKFFACAAERTQAWNGIQQEITGRVQRKLAYEMTALVRIYGNNVTSADVQATLWVLTSDLREQYIGIANVQATDTDWVTLQGKFLLNGSSSKVVLYLEGPPPGTDILVNTLVVKHAAKATPSTPPNVENVAFGVNIIENSNLFDDTNGWFTLGNCTLTVKTDSPRILPPMARDSLGRHELLSGHYLLVTNRAQSWNGPAQVITEKLKLFVTYQVSVWVRIGSGSNRQQNVNVVISADNQWINGGQTEVSDNRWHDINGSFRIEKQPSKVTVYIQGPASGVDLMVAGLQIFPIDRHARFTYLKKRTDKIRRREVTLKFSGLDSSSYTNTTVNVTQTRNDFPIGTCICRSNIDNEDFVNFLVKHFNWAVFGNELKWEVTEPQQGILNYKDADDLLSMCQEYNIQTRGPCIFWEVDKGVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFNHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSAATLFVNDYHIEDGCDTRSCPEKYIQHILDLLKQGAPVGGIGIQGHINSPIGPIVRSSLDKLGVLSLPIWFTELDVSSLNEYVRADDLEVMLREAFAHPAVEGIMLWGFWELLMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEKGHFNFRGFYGTYNVEVVTPSKKIAKTFVLDKGNSPVVVKIDL 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00464 903 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 550 846 IPR001000 GO:0004553|GO:0005975
Trre1g00464 903 FunFam Endo-1,4-beta-xylanase A 552 854 - -
Trre1g00464 903 Pfam Glycosyl hydrolase family 10 560 817 IPR001000 GO:0004553|GO:0005975
Trre1g00464 903 Pfam Carbohydrate binding domain 189 325 IPR003305 GO:0016798
Trre1g00464 903 Pfam Carbohydrate binding domain 14 155 IPR003305 GO:0016798
Trre1g00464 903 Pfam Carbohydrate binding domain 360 503 IPR003305 GO:0016798
Trre1g00464 903 Gene3D - 356 515 - -
Trre1g00464 903 Gene3D - 9 167 - -
Trre1g00464 903 Gene3D - 184 341 - -
Trre1g00464 903 SUPERFAMILY Galactose-binding domain-like 15 169 IPR008979 -
Trre1g00464 903 FunFam Glycosyl hydrolase family 10 protein 184 340 - -
Trre1g00464 903 SMART glyco_10 597 847 IPR001000 GO:0004553|GO:0005975
Trre1g00464 903 Gene3D Glycosidases 549 859 - -
Trre1g00464 903 PANTHER GLYCOSYL HYDROLASE 346 895 IPR044846 GO:0004553|GO:0005975
Trre1g00464 903 SUPERFAMILY (Trans)glycosidases 550 854 IPR017853 -
Trre1g00464 903 SUPERFAMILY Galactose-binding domain-like 187 341 IPR008979 -
Trre1g00464 903 SUPERFAMILY Galactose-binding domain-like 358 518 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00464 Trre-Chr1 3470095 3474013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00464 11 903 Glycoside Hydrolase AT1G58370 66.370 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00464 - - gmx:100818319 1469.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00464 1 3470095 3474013 Trre1g00464 1 3470095 3474013 ECH
Trre1g00464 1 3470095 3474013 Trre5g04972 5 51392954 51396211 PCT