Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00444 ATGGGTGGTGAGGAAAATGCAATGGAGTTTCGACATGGAAATGAGAACATTATGACTTCAGAAATGGATATTAGTTCTGTATCCAATATGGCTAAGTCTTCTTCAGAGGTGCCTAATCATCATCATTTCCTGGGTTCTTCAGCTTGGGATAATCCACTTATTTCATTGAGTCAGGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCACAATGATTTTGCTAATGCAAATTCAACTTATAACCCTCTTGTTTTGGAGAATCAAGGAATGAGTAGCACCTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGTGATCATGTAGCTAACACATCAGGTTATCCAATTCCACCACAGCAATATAATCACATCAAGGATGCTGGAAACCAAAGGGGACATTTTAATGCTGAGCAGTCTCAAGTTGAGGACTCAGTTCATGAGGATGGAGCTACAGGATCTGCACCTGGTAGTGGAAATAGAAGAAAGAGAGGAATTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGTAGTGAAAGATTCTCCAAGGAAGATCTCTGATGGGTCAAAAGAAACTGAAAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAACTAAAGACAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCACGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCGATGAAACTTGCCACTGTGAACCCTGAACTGAACTTTGATGTAGAGCGGCTCTTATCAAAGGATATTCTCCAGTCACGCATAGGACTTGGAATTGGTGGATTTGTTCCTGGTATGAGCTCCTCTCATCCATTCCCAAATGCAAGTTTCCAGGGAAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCACGACTTCCAAAACTTTTATGGAATGGGATATGATTCCAATTCAGCACTTGACAATTTGGGTCCCAATGGGAGGTTGAAACCAGAGTTATAG 1257 0.4161 MGGEENAMEFRHGNENIMTSEMDISSVSNMAKSSSEVPNHHHFLGSSAWDNPLISLSQAHTFGGSSMVSHNDFANANSTYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGDHVANTSGYPIPPQQYNHIKDAGNQRGHFNAEQSQVEDSVHEDGATGSAPGSGNRRKRGIDQNSTFSPNKNAEGDVVKDSPRKISDGSKETEKKPKVEQSGKQTKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRIGLGIGGFVPGMSSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDSNSALDNLGPNGRLKPEL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00444 418 MobiDBLite consensus disorder prediction 206 232 - -
Trre1g00444 418 CDD bHLH_AtBPE_like 248 333 - -
Trre1g00444 418 SMART finulus 264 314 IPR011598 GO:0046983
Trre1g00444 418 MobiDBLite consensus disorder prediction 188 202 - -
Trre1g00444 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 326 IPR036638 GO:0046983
Trre1g00444 418 Pfam Helix-loop-helix DNA-binding domain 261 309 IPR011598 GO:0046983
Trre1g00444 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Trre1g00444 418 MobiDBLite consensus disorder prediction 128 246 - -
Trre1g00444 418 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 159 369 IPR024097 GO:0006355
Trre1g00444 418 FunFam Basic helix-loop-helix transcription factor 255 327 - -
Trre1g00444 418 MobiDBLite consensus disorder prediction 139 165 - -
Trre1g00444 418 Gene3D - 255 329 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00444 Trre-Chr1 3293766 3296593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00444 1 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.119 9.92e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g00444 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00444 - - gmx:100794464 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00444 1 3293766 3296593 Trre1g00444 1 3293766 3296593 ECH