Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00438 ATGGATCTTGGTGGTGTGAGTTTAGATGGGTTAGTTAGTTCAGATCCTGAACAAAAGAACAAATGGTATAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAACCTTCAAACTTGCAAAAACTGATCAACAACAGCAGAGAAACTCTGTTTCACTTTTGAGATCTAATGCTACAACTATGTTTTCTGATGGTCAACACCAACAACAAATGCTTAGTTTTTCAACTCCAAATCCAAAAACTGATTCTTTTTTACTTGACAAAACAACCCAGAATGCTACATTGTCTTATGCTTATCATCCATTGTCTGGTTATAACAGAAACACAGGTTACACTTCTGGAAGCATGCATGGAGGTTTAAGTGGTGTTAGAGGACCATTTACACCTTCACAGTGGATGGAGCTGGAACATCAAGCCTTGATCTATAAGTATATTACTGCTAATGTTGCTGTACCTCATCATTTGCTTATTCCTATAAAAAAAGCTCTTGATTCTGCTGGCTTATCTAGCTACTCAACTGCACTCCTCAGACCCAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATAGTACAGCTACTACTAATGCTACTTCTACCATTACTCAAAGTGGTTCATTGAAGCAGATCAATGTTGCTACTGCTGTTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGCTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAATAGCCTTATCGGACAAGATAATGCTTCTTCTGCTGCCAATACCATCAACAGGATGTTCATGAATAGCAAAGAGAATAACAACACAAGCGAGAGGATGCAGGATGGTCCTGCGCTTCCAATGCTGCCTCCAACGCTAGAGTTGAAACCAAAGGAAAATAACCCTTTCATGATTCAAAAACAGAACATTCCTTATGATGAATCCTCAAGGAACAATGAATTCGGCTTTGTTACTTCCGATTCTTTGCTTAACCCATCACAGAAACCGCCAACCTTGCTTGGTACCCGAGCCTTTGGTTCATCTTCGCAGAATCCTACAAACCGTGACACGGGCACTCAAAATTCCCTTAGGCACTTCATCGATGACTTTCCGAAAACACATTCTGATCATCATAACCGCTCGGGTGGTTTTTCTTGGCCAGAACTCGACATGCAGTCAGATAGGATACAACTATCAATTTCAACACCAATGACTTCCTCAGACTTCATGTCGTTCAATTCTTCAGGAACCAATGAAAAGCTCACACTTTCGCCTCTTAGGCTATCAAGGGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAATAGTACTCTCAATAACAACAATGAATCATCAAACCCTAGTACTAATGCTGCTACTAGACAAGGTAATTGGATTCCAATAACTTGGGAGAGTTCCATGGGAGGTCCTCTTGGTGAAGTACTTCATCTTAGTAATACTATTGCCTATAATGGAAGTGATGATCATTATGGCAACGGTGGTAGCGGCGGCAACAACTCGGCTGCTTTAAATCTTATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATGGGATCATCACCAACCGGGGTGCTTCAAAAGACCGCATTCGGATCACTTTCCAATAGTAGCGCCGGTAGTAGTCCAAGGGCCGAAAACAATAAGACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATAATGCTTCCTTTACTCCTTAG 1962 0.421 MDLGGVSLDGLVSSDPEQKNKWYNGSGLLKQERSGTCTEDELRTFKLAKTDQQQQRNSVSLLRSNATTMFSDGQHQQQMLSFSTPNPKTDSFLLDKTTQNATLSYAYHPLSGYNRNTGYTSGSMHGGLSGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIKKALDSAGLSSYSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNSTATTNATSTITQSGSLKQINVATAVAASPSSSIVVPGGNTASNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNNTSERMQDGPALPMLPPTLELKPKENNPFMIQKQNIPYDESSRNNEFGFVTSDSLLNPSQKPPTLLGTRAFGSSSQNPTNRDTGTQNSLRHFIDDFPKTHSDHHNRSGGFSWPELDMQSDRIQLSISTPMTSSDFMSFNSSGTNEKLTLSPLRLSREIDPIQMGLGVGNSTLNNNNESSNPSTNAATRQGNWIPITWESSMGGPLGEVLHLSNTIAYNGSDDHYGNGGSGGNNSAALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNNASFTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00438 653 SMART QLQ_2 133 169 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre1g00438 653 ProSiteProfiles QLQ domain profile. 134 169 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre1g00438 653 MobiDBLite consensus disorder prediction 585 639 - -
Trre1g00438 653 MobiDBLite consensus disorder prediction 230 266 - -
Trre1g00438 653 PANTHER GROWTH-REGULATING FACTOR 5 75 484 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre1g00438 653 ProSiteProfiles WRC domain profile. 203 247 IPR014977 -
Trre1g00438 653 Pfam QLQ 134 167 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre1g00438 653 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g00438 653 MobiDBLite consensus disorder prediction 247 266 - -
Trre1g00438 653 Pfam WRC 204 246 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00438 Trre-Chr1 3219755 3223336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00438 25 610 GRF Transcription Factor Family AT2G22840 39.052 6.67e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre1g00438 WRC 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00438 - - cam:101496763 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00438 1 3219755 3223336 Trre1g00438 1 3219755 3223336 ECH