Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00422 ATGGCAGTGTTATCGGAGATAGAAGAAGATGAACTCGACGAAGAACCAGGCGAGGTCATCGAATCAGCACCGCCTCAAAAGCTTGGCGAAGAAAGACAACTCACTTCCAACTCCCCAATCAAAAAGAAGCTCCTCAAACGCGGTCACGGTTGGGAAACCCCCAATTTCAACGATCAAGTTACTGTTCATTATGTTGGAACTTTGCTTGATGGATCCAAATTCGGTTCTACTAGGGATTCTGATTGTCCTGTCACATTTGCACTTGGCCAAGGTGAAGTGTATGCTGGATTGGATGATGGTATTGTCACCATGAAGAAAGGAGAGGTGGCATTGTTCACATTACCTGCTGCTGAGTCTGAGGGCATTCAACAAGACTCCAACTCAGTCGTGCAGTTTGAGGTGGAACTCGTTTCGTGGATCACTGTGGTGGATGTTTGCAAAGATGGCGGAATTATCAAGAAAATTACGGAGAAGGGGAAAGGGAATGATCGGCCTGGTGATCTTGATGAAGTCCTTGTGAAGTATCAGGTGTCACTAGTAGATGGCACTGTTGTTGGAGATACACCGGAAGGAGGAGTTGAATTCTATTTGAAGGATGGTCATCTTCTTCCTAGATTGCCGAAAGTGATCATGACTATGACAAGAGGAGAGAAGGCTGAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGTTCAATTCAGTTCCGCCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTAATTGGTGACTCAATGGTGATTAAGAAGATTTTGAAAGAAGGGGAGGGTACTTCCACAGCCAACGAGGGTGCAAATGTTACTGTCAGCTACACAGCCATGCTAGAAGATGGCACTGTATTTGAGAAAGGAGGAGTTGGTGAAACACAGCCCTTGAAATTCATAACTGATGAGGAACAAGTTATTGCTGGTCTAGACCAAGCAGTGGCAACAATGAAGAAGGGTGAGAGGGCCATAATTAGTATACACCCTGATCATGCGTTTGGAAATGTTGAAGAGAAAGCACCATGGGAGTTAAATAATAATGAGAAAATTGAGATGGCTGGGAGGAAGAAAGAAGAAGGGAATTTATTATTTAAAAGTGGCAAATATCAGCGAGCATCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCTAGCTAAATCGTTGAGAATTTCATGCTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTGACTGACTTTCCAGGAGCAATCAAACTATGTACTAAGGTACTTGATGTTGAGTTTCACAATGTGAAAGCTTTGTATAGACGAGCACAAGCATACATAGAGACCGGAGACTTTCTCTTGGCAGATGTAGACATCAAGCAAGCTCTTGAGGTGGATCCACATAATAGGGAGGTAAAGGTACTCAGGATGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAACTGTATGAAAATATGTTTGCTAGTAAACCAAAGAGATTGAAAGTTGAGAAAGAAGAGGGTGATGTGGTGAAACTAGAAACGGACAATGTCGGTGACAGTGCAGCGCCTTCCGATGGTGGTTTAATTATTGATTCTCGCTGA 1671 0.4339 MAVLSEIEEDELDEEPGEVIESAPPQKLGEERQLTSNSPIKKKLLKRGHGWETPNFNDQVTVHYVGTLLDGSKFGSTRDSDCPVTFALGQGEVYAGLDDGIVTMKKGEVALFTLPAAESEGIQQDSNSVVQFEVELVSWITVVDVCKDGGIIKKITEKGKGNDRPGDLDEVLVKYQVSLVDGTVVGDTPEGGVEFYLKDGHLLPRLPKVIMTMTRGEKAELIVQPQYAFGEKGREAGSGFNSVPPDSVLHVNIELVSFKPVINVIGDSMVIKKILKEGEGTSTANEGANVTVSYTAMLEDGTVFEKGGVGETQPLKFITDEEQVIAGLDQAVATMKKGERAIISIHPDHAFGNVEEKAPWELNNNEKIEMAGRKKEEGNLLFKSGKYQRASKKYDKAADFVSEDGSFGDDEQKLAKSLRISCWLNGAACCLKLTDFPGAIKLCTKVLDVEFHNVKALYRRAQAYIETGDFLLADVDIKQALEVDPHNREVKVLRMKLKQLQADSDKKDAKLYENMFASKPKRLKVEKEEGDVVKLETDNVGDSAAPSDGGLIIDSR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00422 556 ProSiteProfiles TPR repeat profile. 454 487 IPR019734 GO:0005515
Trre1g00422 556 Gene3D - 142 259 IPR046357 GO:0003755
Trre1g00422 556 Gene3D - 261 370 IPR046357 GO:0003755
Trre1g00422 556 Gene3D Tetratricopeptide repeat domain 371 517 IPR011990 GO:0005515
Trre1g00422 556 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 259 IPR001179 GO:0003755
Trre1g00422 556 FunFam Peptidylprolyl isomerase 359 514 - -
Trre1g00422 556 MobiDBLite consensus disorder prediction 1 39 - -
Trre1g00422 556 Gene3D - 5 141 IPR046357 GO:0003755
Trre1g00422 556 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 137 IPR001179 GO:0003755
Trre1g00422 556 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Trre1g00422 556 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 360 IPR001179 GO:0003755
Trre1g00422 556 SUPERFAMILY FKBP-like 266 356 - -
Trre1g00422 556 MobiDBLite consensus disorder prediction 536 556 - -
Trre1g00422 556 SUPERFAMILY FKBP-like 34 141 - -
Trre1g00422 556 SMART tpr_5 420 453 IPR019734 GO:0005515
Trre1g00422 556 SMART tpr_5 454 487 IPR019734 GO:0005515
Trre1g00422 556 SMART tpr_5 371 404 IPR019734 GO:0005515
Trre1g00422 556 PANTHER PEPTIDYLPROLYL ISOMERASE 142 260 - -
Trre1g00422 556 SUPERFAMILY TPR-like 366 516 IPR011990 GO:0005515
Trre1g00422 556 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g00422 556 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 374 IPR001179 GO:0003755
Trre1g00422 556 SUPERFAMILY FKBP-like 144 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00422 Trre-Chr1 3056574 3062303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00422 27 517 Calmodulin-binding Proteins AT3G25230 51.724 1.67e-176 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00422 K09571 - gmx:100798382 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00422 1 3056574 3062303 Trre1g00422 1 3056574 3062303 ECH