Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00421 ATGGATAAAATCAAAGTTAAGTACAAGCTTAACAATGAAGATTGGAAACCATCACCAATTACAGCTTTAGCTACTAGTATTGACGGTACTCGCGTTGCTGCATCTCGTGAAGATGGTTCTTTAGAGCTTTGGTTTGTTTCTCCTGGTACAATTGGTTGGCACTGTCAATTGACGATTCATGGAGACCCTAATAGAATTGTATCTTCATTAATTTGGTGTCCTGGTGGTTTAACTTCAAATGGATTTCCGCATGGTCGATTATTTTCATCTAACATAGATGGTTCTGTTTCTTTTTGGGATCTCTATAACTTGAAGCAAACGATGGTGCTTGAATCTAATGGTGTCTCAATCTGGCAAATGGCCGTGACGCTTCCTAAAAGTGACGATGGTGAAACTAATGGTGTTCGAATTGGGAATGGTTATTTGAAGAGATTTCACGGTTCCGACGAACTTGACAACAGCGAAAGTGATGAAGATTCTGATTCCGATTCACCTGATGTTATTAAGCAATCCAGTGTAATGGACCCAAGAGTAGCAGTTGCTTTTGATGATGGATGTGTTAGAATTTACACTATATCTGATTCAAATGAATTTATATATTTAAAATCCATGAGCCGGGTTCAAGGACGGGTTTTAAGTGTGGCTTGGAGCACGGATGCTAAATTCATATTTTCAGGAAGTAGTGATGGGATAATACGAATCTGGGATGCCAAATCAGGTATTGAAGCCCATCATATTCCAGCTAGACTGGGTGTGGACAGTGGACATGAACTTTGTATATGGTCGTTACTATATTTAAGGTCTGGAACACTTGTTAGTGGAGACAGCAGTGGGAGCGTCCAGTTTTGGGACTGCCAACAAGGAACTCCCTCTCAAGATCCTATCACTAAACACAAAGGAGATGTACATGCTTTGGCAGCTGCCCCTGATCACAGTATGGTGTTCTCTGCCGGTTCTGATGGAAAGGTTGTTCTTTATAAAATGTCTTCATCAATGATAGAGAAAGAGCATTGGGTCTACGTTGATTATCAGAAAAAGCATACACATGATATCCGAGCTTTGACTGTTGCTGTGCCAATAAGTCAAGAAGATACTTTGCCAGATGAAAGGGTTAAAAGAGCTCGTCATGCAGAAAAACCAGATGTTTCTAATTACCACAAGTGGGCTCATTCGGGGCATCCCATGCTTATCTCAGCAGGAGATGACACACAACTTTATGCATACCCCGCAAAAGAATTCACCGGGTTTAAACCTCATTGTATCTGTCCGGTGCCTCAGAGAACACCCATTCATGTAGCACTTAATACTTCCTTCAATCAATCACCAATGCTTTTACTGCAGTCTTCGCGTTGGATAGAAGTCCGTTTGCTACATCTCAAAAATGTCCGTAGAACTGGAGACTATGCAAAGGCTGAAAGTGTCGGCCGTTTCAAGATTAAGGCATCTCGTAAGATAATTTGTAGCACCCTTGCTAATTCAGGGGTGTTTTTTGCGTATTCTGATAATGAAAAGCCTACTCTTCTTAAAGTGGAGAGAACCGAAGCAGGAAAAACTACATGGAGTTTTGGTAAAATGAAGCTTCCTGAGAGATTACCATTTGCCCATTCAATGATATTTTCTCATGACTCCTCTTGGTTGATAGTAGCTGGCCATGATAGAAGGATATATGTTGTCGATGCAAATAGCTCGGAACTAGTACATACTTTTACACCATTTCGTGAACCTCAAGATGATGGATTATCACCGGCGGAACCACCCATCACAAAATTGTTTACTAGTTCTGATAGGCAGTGGTTGGCTGCTGTGAACTGCTTTGGGGATATATATGTATTCAACTTGGAGACACTAAGGCAGCACTGGTTCATTTCAAGAATGGATGGTGCCTCTGTTACAGCCGGAGGATTTCCGCCCCAGAACAACAATATACTGATAGTTACAACTTCTTCAAATCATGTGTATGCATTCGACGTAGAGGCCAGACAATTGGGGGAATGGTCGATGCGGAATACATTTGTTCTTCCAAGGAGATTTCATGAGTTTCCTGGTGAAGTCATTGGGCTTTCATTCCCTCCCTCGTCAAATTCATCTACGGTTATGGTTTATAGCTCCAGGGCGACGTGCTTGATTGACTTTAGCTTACCGGTGGAGCAAGATGAAGGTGAAAAGTTACATACTCGAGATTCAATGATCAAGAACTCACCAAATTTGAACCTTAAGAAAAGGAGTAAATTTAAGAAGAACTTTGAAGTTTTGCAGTTAGAAAAACAGAACTTCGAAGTTTCAACGTTAGAAAAAGACCGTGTCTTATATCTTACCCATATTTCAAATAATCGCTTCTTTATGATAGAAAAACCCTGGTCCGATGTGGTCAATAGCTTAGAAGTTCAACCAGTCCACAGACATATTTATGGAACATAG 2418 0.4086 MDKIKVKYKLNNEDWKPSPITALATSIDGTRVAASREDGSLELWFVSPGTIGWHCQLTIHGDPNRIVSSLIWCPGGLTSNGFPHGRLFSSNIDGSVSFWDLYNLKQTMVLESNGVSIWQMAVTLPKSDDGETNGVRIGNGYLKRFHGSDELDNSESDEDSDSDSPDVIKQSSVMDPRVAVAFDDGCVRIYTISDSNEFIYLKSMSRVQGRVLSVAWSTDAKFIFSGSSDGIIRIWDAKSGIEAHHIPARLGVDSGHELCIWSLLYLRSGTLVSGDSSGSVQFWDCQQGTPSQDPITKHKGDVHALAAAPDHSMVFSAGSDGKVVLYKMSSSMIEKEHWVYVDYQKKHTHDIRALTVAVPISQEDTLPDERVKRARHAEKPDVSNYHKWAHSGHPMLISAGDDTQLYAYPAKEFTGFKPHCICPVPQRTPIHVALNTSFNQSPMLLLQSSRWIEVRLLHLKNVRRTGDYAKAESVGRFKIKASRKIICSTLANSGVFFAYSDNEKPTLLKVERTEAGKTTWSFGKMKLPERLPFAHSMIFSHDSSWLIVAGHDRRIYVVDANSSELVHTFTPFREPQDDGLSPAEPPITKLFTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRMDGASVTAGGFPPQNNNILIVTTSSNHVYAFDVEARQLGEWSMRNTFVLPRRFHEFPGEVIGLSFPPSSNSSTVMVYSSRATCLIDFSLPVEQDEGEKLHTRDSMIKNSPNLNLKKRSKFKKNFEVLQLEKQNFEVSTLEKDRVLYLTHISNNRFFMIEKPWSDVVNSLEVQPVHRHIYGT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00421 805 SMART WD40_4 103 191 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 246 284 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 291 327 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 197 236 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 3 45 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 524 559 IPR001680 GO:0005515
Trre1g00421 805 SMART WD40_4 52 100 IPR001680 GO:0005515
Trre1g00421 805 SUPERFAMILY Nucleoporin domain 392 573 - -
Trre1g00421 805 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Trre1g00421 805 SUPERFAMILY WD40 repeat-like 175 662 IPR036322 GO:0005515
Trre1g00421 805 Gene3D - 480 735 IPR015943 GO:0005515
Trre1g00421 805 MobiDBLite consensus disorder prediction 149 168 - -
Trre1g00421 805 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 7 805 IPR044622 GO:0010073|GO:0035266
Trre1g00421 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Trre1g00421 805 Gene3D - 165 446 IPR015943 GO:0005515
Trre1g00421 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Trre1g00421 805 Gene3D - 5 141 IPR015943 GO:0005515
Trre1g00421 805 Pfam Anaphase-promoting complex subunit 4 WD40 domain 178 249 IPR024977 -
Trre1g00421 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 240 - -
Trre1g00421 805 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 15 240 IPR011044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00421 Trre-Chr1 3047707 3053199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00421 32 283 Acyl Lipid Metabolism Gene Families AT3G18860 22.695 1.56e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00421 K14548 - gmx:100797494 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00421 1 3047707 3053199 Trre1g00421 1 3047707 3053199 ECH