Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1460 ATGGAAAATCGAATCTACACTTCAAATAGCCCAACCAACTACATATCCCCGACGACCCGATTTTACGACCCGAATACAATGTTCCTCGCTCATTATCGCCGCACCGCCGAAGCTGCCGCCGCTGCTTCCTCTATCCGTTACTCATCTTCTCTTTCTGATATCGACATTGCTCCACCTGGAGTTTCTTCTAGAATCTCCTCTTCTTCCACTGCTAATTTCCTCTCCCAAACTAATCCTTGGGCTAACGCTTTCAATAACACCGCCGCAAATGTTGCCTCTGCTTCACTTCAACTTAAACGCTCTGCTGACGCGCTCTACCATCCAACCATTTTGAATACATACGGGCAAAACGAAGCTTGGTATACTACAAACTCACTGGCCAAGCGCCCTAGATATGATACCGGAAGCACTTTGCCTATTTATCCACAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGTTCCAAGTGAAACTCTTCCTGAAAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGTAAATTTAATCATCCAAATGTTCCCTCAGAAAATCCTGATGTTTCTGGCTTACCCGAGAGACCACAAGAGCCCCCTTGTGCGTTCTACTTGAAAACTGGAAAATGTAAATATGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTCTCTGATGAATCGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTATGTTTGACGGGGCAATAGGAGATACACAACAAATTCAGCCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACAGGGGGAAGTGGATTGTCCGTTCTACATGAAAACTGGAAGTTGCAAGTTTGGGGCCACTTGCCGCTACAATCATCCCGTCATGAATGCAATTAATCCACCTATTTCTGCATTGGCCCCTTCTCTTTTGGGATCCTCGGCTGCTAATCATAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGGATCTCAAATCCAATGACCCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGTCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAATATCATCACCCAATTGACCGCTCAACAGAATCATCAAAACTGCAATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATTTGCCCATATTATTTGAAAACTGCCACGTGCAAGTTTGGCGCGACATGCAAGTTTGATCATCCACCACCAGGAGAAGTGATGGAGTTGGCCAAGTCGCAAGGAACTTCTACAACCAATGGAGGAGAAACAGAGACCAATGTAGATGTGTCTGGTTCTGCTCCGGAACAATAG 1539 0.4444 MENRIYTSNSPTNYISPTTRFYDPNTMFLAHYRRTAEAAAAASSIRYSSSLSDIDIAPPGVSSRISSSSTANFLSQTNPWANAFNNTAANVASASLQLKRSADALYHPTILNTYGQNEAWYTTNSLAKRPRYDTGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNVVPSETLPERPGEPDCPFFLKTQKCKFGSRCKFNHPNVPSENPDVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQFSDESSRTVEQTQTNSSMFDGAIGDTQQIQPLISPLLHNSKGLPVRQGEVDCPFYMKTGSCKFGATCRYNHPVMNAINPPISALAPSLLGSSAANHNIGVINPAASFYQAFDPRISNPMTQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRSTESSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMELAKSQGTSTTNGGETETNVDVSGSAPEQ* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1460 512 Gene3D - 184 232 - -
Tpr7g1460 512 Gene3D - 106 183 - -
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 198 222 IPR000571 GO:0046872
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 341 IPR000571 GO:0046872
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 427 IPR000571 GO:0046872
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 264 IPR000571 GO:0046872
Tpr7g1460 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 453 478 IPR000571 GO:0046872
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 451 479 IPR000571 GO:0046872
Tpr7g1460 512 MobiDBLite consensus disorder prediction 486 512 - -
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Tpr7g1460 512 PANTHER CCCH ZINC FINGER/TIS11-RELATED 66 491 IPR045877 GO:0003729
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 403 429 IPR036855 GO:0046872
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 201 222 IPR036855 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 237 264 IPR000571 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 451 478 IPR000571 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Tpr7g1460 512 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Tpr7g1460 512 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 66 491 - -
Tpr7g1460 512 Gene3D - 400 493 - -
Tpr7g1460 512 Gene3D - 235 348 - -
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 319 342 IPR036855 GO:0046872
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 239 265 IPR036855 GO:0046872
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 237 265 IPR000571 GO:0046872
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Tpr7g1460 512 MobiDBLite consensus disorder prediction 485 512 - -
Tpr7g1460 512 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Tpr7g1460 512 SUPERFAMILY CCCH zinc finger 454 478 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1460 Tpr-Chr7 16183192 16189159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1460 312 480 C2H2 Transcription Factor Family AT5G18550 33.529 2.82e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1460 zf-CCCH 2.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1460 - - cam:101499264 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1460 7 16183192 16189159 Tpr7g1460 7 16183192 16189159 ECH