LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g0818	ATGGCAAACTCGGAGAAGGTCAATGCTGGAAACCTCTCAGGCTCAGAGAAGACAACAAACACAGTATGTGTTTCTACTGACGACGAAAACATCATTCTAAATCCTCAGTTTGAGGATGGCCTTAATAATTGGACTGGAAGAGGCTGCAAGATTGCATTACATGATTCCATTGCAGATGGTAAAATCCTTCCAAAATCCGGGAAATTCTTTGCATCTGCAACCGAACGTACACAAAGTTGGAACGGAATTCAGCAAGAGATCACTGGACGAGTGCAGCGCAAGTTTGTGTACGAAGTCACTGCTTTAGTTCGGATATTTGGCAACAATGTCACTATTTCTGATGTACGCGCTACATTGTATGTTCAAAAGCCAGATTTCCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGCTCAAATTCAGGGAAAATTCCTTCTAAATGATTCTCCCTCAAAAGTAATTGTTTATTTAGAAGGCCCTCCTGCAGGCACTGACATTCTTCTAAATACTTTGGTTATAAAACATGCAGCTAAAACACCGCCGTCATCACCCCCGGATTTTAAGAATGTTGCTTTTGGTGTTAATATAATTGAGAATAGTAATCTGGATAATGGTATCAATGGTTGGTCTCCTCTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTGTAATTCCGCCAATGGCAAGAGACTCTCTCGGTCCTCATGAATCCCTGAGTGGACGCTACATTCTTGTAACTAACCGCACACAAACATATATGGGTCCTTCTCAGACAATTACTGAGAAATTGACACTCTATTTAACTTATCAAGTATCTGCTTGGGTCCGGATTAGTTCCGGATCACATGGGCCTCAGAATGTGGGTATTGCTCTTAGTGTTGATGGCCAGTGGGTCAATGGAGGGCAAACCGAAGTTGCTGACAGAAGATGGCATGAAATCGGTGGTTCGTTTAGAATTGAAAAACAGCCATCTAATGTTTTTGTTTATATCCAAGGTCCTGTTTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGGCAGGCGAGGTTTAGATATTTAAGGGAGCAGACAGACAAGATCCGTAAGCAAGATGTTACGTTAAAATTTTCTGGGCTGGACACAAGCGAGTATACCTTTGTGAAAGTTAGACAAATACAGAATGATTTTCCAATTGGATCATGCATCAATAGAACAAATATTGACAACGAAGATTTTGTTGATTTCTTTGTGCAACATTTTAACTGGGCTGTATTCGGTAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGTAACTTGAACTACAAGGATGCTGATGATATGTTAGACTTATGTGAGAAGTACAAGATAGACATTCGCGGACATTGTATCTTCTGGGAAGTGGATGGCAATGTGCAGCAATGGATCAAATCACTGAATAAAAATGATTTATCGGCAGCTGTCCAAAACCGCTTAACTGGTTTATTGACTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCGTTTTATCAGAACATACTAGGTAAAGATATAAGGCCAAACATGTTCAAGACTGCACACCAACTAGATCCATCTGCTACGTTATTTGTGAATGATTATCATGTCGAAGATGGATGCGACACAAATTCATCTCCAGAAAAATACACACAACAGATTCTTGATTTGCAAGATCAAGGTGCTCCGGTTGGGGGAATTGGAATTCAAGGTCACATTGATAGTCCTATTGGACCTATTGTTTGTTCAGCGCTCGATAAGTTGGCTTCTCTCGGTCTACCAATCTGGTTTACCGAGCTTGATGTGTCTTCCACTAATGAATATATTAGAGGCGATGATTTGGAAGTTATGTTGCGCGAAGCTATGGCACACCCTGCCGTAGATGGTGTAATGCTATGGGGATTTTGGGAATTATTTATGAGTCGCGACAATTCACATTTGGTGAATGCCGAAGGTGAAATCAATGAAGCTGGCAGAAGATTTCTTGATCTTAAAGAAGAGTGGTTATCTCAAACTCATGGTCATGTTGATGAGCAAGGAGAATTCAGCTTTAGAGGATTCAGTGGTTTGTACAATGTGGAACTTGTTACCTTTGAAAAGGAAATTTCTAAGACATTTTTTGTTGATAAGAGTGACTCTTCAGGGGTGATATCAATTGACTTGTAA	2229	0.4065	MANSEKVNAGNLSGSEKTTNTVCVSTDDENIILNPQFEDGLNNWTGRGCKIALHDSIADGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKFVYEVTALVRIFGNNVTISDVRATLYVQKPDFREQYIGIANVQATDKDWAQIQGKFLLNDSPSKVIVYLEGPPAGTDILLNTLVIKHAAKTPPSSPPDFKNVAFGVNIIENSNLDNGINGWSPLGNCTLSVGTGSPRVIPPMARDSLGPHESLSGRYILVTNRTQTYMGPSQTITEKLTLYLTYQVSAWVRISSGSHGPQNVGIALSVDGQWVNGGQTEVADRRWHEIGGSFRIEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLREQTDKIRKQDVTLKFSGLDTSEYTFVKVRQIQNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWYWTEPQQGNLNYKDADDMLDLCEKYKIDIRGHCIFWEVDGNVQQWIKSLNKNDLSAAVQNRLTGLLTRYKGKFKHYDVNNEMLHGSFYQNILGKDIRPNMFKTAHQLDPSATLFVNDYHVEDGCDTNSSPEKYTQQILDLQDQGAPVGGIGIQGHIDSPIGPIVCSALDKLASLGLPIWFTELDVSSTNEYIRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNSHLVNAEGEINEAGRRFLDLKEEWLSQTHGHVDEQGEFSFRGFSGLYNVELVTFEKEISKTFFVDKSDSSGVISIDL*	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g0818	742	PANTHER	GLYCOSYL HYDROLASE	17	742	IPR044846	GO:0004553\|GO:0005975
	Tpr7g0818	742	Pfam	Carbohydrate binding domain	201	342	IPR003305	GO:0016798
	Tpr7g0818	742	Pfam	Carbohydrate binding domain	30	167	IPR003305	GO:0016798
	Tpr7g0818	742	SUPERFAMILY	Galactose-binding domain-like	28	182	IPR008979	-
	Tpr7g0818	742	PRINTS	Glycosyl hydrolase family 10 signature	467	479	IPR001000	GO:0004553\|GO:0005975
	Tpr7g0818	742	PRINTS	Glycosyl hydrolase family 10 signature	549	560	IPR001000	GO:0004553\|GO:0005975
	Tpr7g0818	742	PRINTS	Glycosyl hydrolase family 10 signature	581	593	IPR001000	GO:0004553\|GO:0005975
	Tpr7g0818	742	Coils	Coil	668	688	-	-
	Tpr7g0818	742	Gene3D	Glycosidases	389	698	-	-
	Tpr7g0818	742	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	390	685	IPR001000	GO:0004553\|GO:0005975
	Tpr7g0818	742	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	17	742	-	-
	Tpr7g0818	742	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	613	623	IPR031158	-
	Tpr7g0818	742	Gene3D	-	197	356	-	-
	Tpr7g0818	742	Gene3D	-	23	182	-	-
	Tpr7g0818	742	SUPERFAMILY	(Trans)glycosidases	394	692	IPR017853	-
	Tpr7g0818	742	SUPERFAMILY	Galactose-binding domain-like	199	359	IPR008979	-
	Tpr7g0818	742	Pfam	Glycosyl hydrolase family 10	399	656	IPR001000	GO:0004553\|GO:0005975
	Tpr7g0818	742	SMART	glyco_10	436	686	IPR001000	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g0818	Tpr-Chr7	7216475	7220806	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g0818	24	742	Glycoside Hydrolase	AT1G58370	71.923	0.0	1115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g0818	-		-	gmx:100784250	1275

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr7g0818	7	7216475	7220806	Tpr7g0818	7	7216475	7220806	ECH
	Tpr1g3584	1	39974359	39982653	Tpr7g0818	7	7216475	7220806	PCT