Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4803 ATGAAGCGAGTGAAAAATGAGAATGAAGAGGATGTGCTCTGCAATGATCAAACACAGTCACGGTTGAATGGTGAAGGTAATGGAGGAAGTGTTGGCGGTGGAGTTGTTCTCAAAAAAGGTCCATGGACATCTGCGGAAGATGCTATTTTGATTGACTACGTTAGGAAGCATGGAGAGGGGAACTGGAACGCTGTTCAAAAGCATTCAGGCCTGTCTCGATGTGGAAAAAGTTGCCGACTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGAGGAGGAGCAGTTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCAGCGCACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTTCTCGGGCTGGCTTGCCACTTTATCCTCCAGATGTGTCTTTGCGAAAAATGCAAGGGAATCAACGTGGCCAAGGCACTGGTAGAATCGATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATCCATGATGTAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCTATTGCAATTGTGCCTGAGAATCCTGACATTTCTGCTAATAGCATTCTGCTTAACGGTCTTGATTCTCCTCCATATTGTAATTCTGTGCCATCATCATCACTACCTAACCATCACCATCTTCGAGAATCAACTATGTCTTTTCTTGGTTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATAAGATTGTACAATCATTCGGATTGCATTCTCCCCTTGATCCTGGTCTTTCCTCACACAACTCAATGTATTACCGCCATTCCCTATCAAATGGCAATTCTTCTACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGATACCGGCTTTGGTGGCTGGGGGGCTACCTTTCCCCCATCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGGGCTAGAGTCCGGTTCTTCTTCACCGCATAATAGTGGTACGCTCGAGGCCATAATTTATCAGAAGAAGACTCTTCCAAATTCAAAGAACAATTATTCTGACAAGAGTTCACATTCATCTACTGCAACTCCTGTTGACAGAGCTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGAAGATTACAATGACCATGCATCTCCCTTTGGTGCAACCTCAATCTTGAATGAGTGTCCTGCTGTTAACTCCAATGCAAACTCATGGGATAAATTGACACCTTCTCAGAACTTTAGTGGAAACAATGTGAAATATGAGCCTGTTGACCAAGTTTATACCCCAAGCAGTGAAAACCCTCTTTCTATGTTGAACATCACTTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGATGCTAGGGACAACTTAACAGATTACAAGAAGCATGTGGCTGGTGGGTCTTATTCTTCAAGTACAGGGGGTTACTTTATGCACATGGCTTAA 1608 0.4341 MKRVKNENEEDVLCNDQTQSRLNGEGNGGSVGGGVVLKKGPWTSAEDAILIDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTAEEEQLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRSRAGLPLYPPDVSLRKMQGNQRGQGTGRIDDGDRGHHDFLPKNNYEIHDVIFDNLKENQGILPIAIVPENPDISANSILLNGLDSPPYCNSVPSSSLPNHHHLRESTMSFLGSSGTNKNWFYPFYHVQDHSSDKIVQSFGLHSPLDPGLSSHNSMYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPDTGFGGWGATFPPSPLNESVDVFNQSPLPHGGLESGSSSPHNSGTLEAIIYQKKTLPNSKNNYSDKSSHSSTATPVDRAESSALNMNETEWEDYNDHASPFGATSILNECPAVNSNANSWDKLTPSQNFSGNNVKYEPVDQVYTPSSENPLSMLNITWPDVLLASDWHEQCYGHEKNMTDARDNLTDYKKHVAGGSYSSSTGGYFMHMA* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4803 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Tpr3g4803 535 MobiDBLite consensus disorder prediction 383 407 - -
Tpr3g4803 535 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 515 - -
Tpr3g4803 535 Gene3D - 38 91 - -
Tpr3g4803 535 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Tpr3g4803 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Tpr3g4803 535 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Tpr3g4803 535 Gene3D - 94 140 - -
Tpr3g4803 535 SMART sant 91 139 IPR001005 -
Tpr3g4803 535 SMART sant 38 88 IPR001005 -
Tpr3g4803 535 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 515 - -
Tpr3g4803 535 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Tpr3g4803 535 MobiDBLite consensus disorder prediction 144 176 - -
Tpr3g4803 535 MobiDBLite consensus disorder prediction 1 32 - -
Tpr3g4803 535 CDD SANT 41 86 IPR001005 -
Tpr3g4803 535 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Tpr3g4803 535 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Tpr3g4803 535 MobiDBLite consensus disorder prediction 344 370 - -
Tpr3g4803 535 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4803 Tpr-Chr3 52877218 52881694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4803 30 523 MYB Transcription Factor Family AT3G11440 42.549 3.84e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4803 Myb_DNA-bind_6 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4803 K09422 - gmx:100805804 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4803 3 52877218 52881694 Tpr7g1545 7 17382031 17386316 PCT