Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3614 ATGGATAAAATCAAAGTTAGGTATAAACTTAACAATGAAGATTGGAAACCATCACCAATTACAGCTTTAGCTACAAGCATTGATGGTACTCGAGTTGCTGCATCTCGTGAAGATGGCTCTTTAGAGCTTTGGTTTGTTTCTCCCGGTACAATAGGTTGGCACTGTCAATTGACGATTCATGGTGACCCTAATAGAATTGTATCTTCATTAATTTGGTGTCCTGGTGGTTCAAAATCAAATGGATTTCAGCATGGTCGATTATTTTCATCTAATATAGACGGTTCTGTATCATTTTGGGATCTCCATAACTTGAAGCAAACGATGGTGCTTGAATCTAATGGTGTCTCAATCTGGCAAATGGCTGTGACACTTCCTAAAAGAGATGTTGGTGAAACTAATGGTGTTCGAATTGGGAATGGTTATTCAAAGAGATTTCACGGTTCCGATGACCACGAAAACAGCGAAAGTGATGACGATTCTGATTCCGATTTGCCTGATGTTATCAAGCAATCCAGTTTAATGGACCCAAGTGTAGCAGTTGCTTTTGATGATGGAAGTGTTAGAATTTACACTATATCCAATGCAAATGAATTTATATATTTAAAATCCATGAGCCGGGTCCAAGGACGGGTTTTAAGTGTGGCTTGGAGCACGGATGCTAAATTCATATTTTCAGGAAGTAGTGATGGGATAATACGAATCTGGGATGCCAAATCAGGTATTGAAGCCCATCATATTCCAGCTAGACTGGGTGCGGAAAGTGGACATGAACTTTGTATATGGTCGTTACTATATTTAAGGTCAGGGACACTTGTTAGTGGAGACAGCAGTGGGAGCATCCAGTTTTGGGACTGCCAACAAGGAACTCCCTCTCAAGATCCTATTACTAAACACAAGGGAGATGTACATGCTCTGGCAGCTTCCCCCGATCACAATATGGTGTTCTCAGCCGGTTCTGATGGAAAGGTTGTTCTTTATAAGAAGTCTTCATCAATGATAGAGAATGAGAATTGGGTCTACGTTGATTATCAGAAAAAGCATACACATGATATCCGAGCTTTGACTGTTGCTGTGCCGATAAGTCAAGAAGATACTTTGCCAGATGAAAGGATTAAAAGAGCTCGTCATGCAGAAAAGCCAGATGTTTCTAATTACCACAAGTGGGCTCATTCGGGGCATCCCATGCTTATCTCAGCAGGAGATGACACACAACTTTATGCATACCCAGCAAAAGAATTCACTGGGTTTAAACCTCATTGTATCTGTCCTGTGCCTCAGAGAACACCAATTCATGTAGCACTTAATACTTCCTTCAATCAATCACCAATGCTTCTACTGCAGTCTTCACGTTGGTTAGAAATTCGTTTGCTACATCTAAAAAATGTTCGTAGAACTGGAGACTATGCAAAGGCTGAAAGTGTTGGCCGTTTCAAGATTAAGGCATCTCGTAAGATAATTTGTAGCACCCTTGCTAATTCAGGGGTGTTTTTTGCGTATTCTGATAATGAAAAGCCTAGTCTTCATAAAGTGGAGAGATCCGAAGCAGGAAAAATTACATGGAGTTTTGGTAAAATGAAGCTTCCTGAGAGATTACCATTTGCTCATTCAATGATTTTTTCTCACGACTCCTCTTGGTTGATAATAGCTGGCCATGATAGAAGGATATATGTTGTGGATGCCAATAGCTCGGAACTAGTACATACTTTTACACCATTTCGTGAACCTCAAGATGATGGATTATCACCGGCTGAACCACCTATCACAAGATTGTTTACTAGTTCTGATCGGCAGTGGTTGGCTGCTGTGAATTGCTTTGGGGATATATATGTATTTAACTTGGAGACACTAAGGCAGCACTGGTTCATTTCAAGAATGGCCGGTGCCTCTGTTACAGCTGGAGGATTTCCGCCTCAGAACAACAATATACTGATAATTACAACTTCTTCAAATCATGTGTATGCATTCGACGTAGAGGCCAGACAATTGGGGGAATGGTCGATGCGGAATACGTTTGTTCTTCCTAGAAGATTTCATGAGTTTCCCGGTGAAGTCATCGGGCTTTCATTCCCTCCCTCTTCAAATTCATCTACGGTTATGGTTTATAGCTCCAGGGCCATGTGCTTGATTGACTTTAGCTTACCGGTGGAGCAAGATGAAGGTGAAATGTTACATACTCGAGATTCAATGATCAAGAATTCACCAAATTTAAACCTTAAGAAAAGGACTAAATTTAAGAAGAACTTTGAAAACATTGAAGTTTTGCCGTTAGAAAAACAGAATTTCGAAGTTTCAACGTTAGAAAAAGACCAAGTCTTATATCTTACCCATATTTCAAATAGTCGCTTCTTTATGATAGAAAAACCTTGGTCGGATGTGGTCAATAGCTTAGAAGTTCAACCAGTCCACAGACATATTTATGGAACATAG 2427 0.4017 MDKIKVRYKLNNEDWKPSPITALATSIDGTRVAASREDGSLELWFVSPGTIGWHCQLTIHGDPNRIVSSLIWCPGGSKSNGFQHGRLFSSNIDGSVSFWDLHNLKQTMVLESNGVSIWQMAVTLPKRDVGETNGVRIGNGYSKRFHGSDDHENSESDDDSDSDLPDVIKQSSLMDPSVAVAFDDGSVRIYTISNANEFIYLKSMSRVQGRVLSVAWSTDAKFIFSGSSDGIIRIWDAKSGIEAHHIPARLGAESGHELCIWSLLYLRSGTLVSGDSSGSIQFWDCQQGTPSQDPITKHKGDVHALAASPDHNMVFSAGSDGKVVLYKKSSSMIENENWVYVDYQKKHTHDIRALTVAVPISQEDTLPDERIKRARHAEKPDVSNYHKWAHSGHPMLISAGDDTQLYAYPAKEFTGFKPHCICPVPQRTPIHVALNTSFNQSPMLLLQSSRWLEIRLLHLKNVRRTGDYAKAESVGRFKIKASRKIICSTLANSGVFFAYSDNEKPSLHKVERSEAGKITWSFGKMKLPERLPFAHSMIFSHDSSWLIIAGHDRRIYVVDANSSELVHTFTPFREPQDDGLSPAEPPITRLFTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRMAGASVTAGGFPPQNNNILIITTSSNHVYAFDVEARQLGEWSMRNTFVLPRRFHEFPGEVIGLSFPPSSNSSTVMVYSSRAMCLIDFSLPVEQDEGEMLHTRDSMIKNSPNLNLKKRTKFKKNFENIEVLPLEKQNFEVSTLEKDQVLYLTHISNSRFFMIEKPWSDVVNSLEVQPVHRHIYGT* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3614 808 Gene3D - 165 450 IPR015943 GO:0005515
Tpr1g3614 808 SUPERFAMILY WD40 repeat-like 393 712 IPR036322 GO:0005515
Tpr1g3614 808 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Tpr1g3614 808 SUPERFAMILY WD40 repeat-like 15 618 IPR036322 GO:0005515
Tpr1g3614 808 Gene3D - 520 732 IPR015943 GO:0005515
Tpr1g3614 808 Gene3D - 5 143 IPR015943 GO:0005515
Tpr1g3614 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 240 - -
Tpr1g3614 808 SMART WD40_4 243 284 IPR001680 GO:0005515
Tpr1g3614 808 SMART WD40_4 524 559 IPR001680 GO:0005515
Tpr1g3614 808 SMART WD40_4 52 100 IPR001680 GO:0005515
Tpr1g3614 808 SMART WD40_4 291 327 IPR001680 GO:0005515
Tpr1g3614 808 SMART WD40_4 3 45 IPR001680 GO:0005515
Tpr1g3614 808 SMART WD40_4 197 236 IPR001680 GO:0005515
Tpr1g3614 808 Pfam Anaphase-promoting complex subunit 4 WD40 domain 178 249 IPR024977 -
Tpr1g3614 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 327 IPR001680 GO:0005515
Tpr1g3614 808 Pfam WD domain, G-beta repeat 296 326 IPR001680 GO:0005515
Tpr1g3614 808 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 6 808 IPR044622 GO:0010073|GO:0035266
Tpr1g3614 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3614 Tpr-Chr1 40321172 40327405 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3614 K14548 - gmx:100797494 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3614 1 40321172 40327405 Tpr1g3614 1 40321172 40327405 ECH