Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3613 ATGGCAGTGTTATCGGAAATTGAAGAAGATGAACTCGATGAAGAACCAGGCGAGGTCATCGAATCAGCACCGCCTCAAAAGCTCGGCGAAGAAAGACAACTCAATTCCAACTCCCCAATCAAAAAGAAGCTTCTCAAACGCGGTCACGGTTGGGAAACCCCCAATTTCAACGATCAAGTTACCGTTCATTATGTTGGAACTTTGCTTGATGGAACCAAGTTGGGTTCTACCAGGGATTCTGATTGTCCTGTCACATTTACACTTGGCCAAGGTGAAGTGTATGCTGGATTGGATGATGGTATTGTCACCATGAAGAAAGGAGAGGTGGCATTGTTCACATTACCTGCTGTTGAGTCTGAAGGCATTCCACAAGACTCCAACTCAGTTGCGCAGTTTGAGGTGGAACTCGTTTCGTGGATTACGGTGGTGGATGTTTGCAAAGATGGCGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGATCGGCCTGGTGATCTTGACGAAGTCCTTGTGAAGTATCAGGTGTCACTAGTAGATGGCACTGTTGTTGCAGAAACACCGGAAGGAGGAGTTGAATTCTACTTGAAGGATGGTCATTTTCTTCTTAAATTGCCGAAAGTGATCATGACTATGACAAGAGGAGAGAAGGCTGAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGTTCAATTCAGTTCCACCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAACCTGTCATAAATGTAATTGGTGACTCAACGGTGATTAAGAAGATTTTGAAAGAAGGGGAGGGTACTTTCACAGCCAACGAGGGTGCAAATGTTACTGTCAGCTACACAGCCATGCTAGAAGATGGCACTGTATTTGAGAAAAGAGGAATCGGTGAAACACAACCCTTGAAATTTGTAACTGATGAGGAACAAGTTATTACTGGTCTAGACCGAGCAGTGGCAACAATGAAGAAGGGTGAGAGGGCCATAATTAGTATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACAAGAACTGGCTATCGTGCCACCAGGCTCAAAAGTTGTCTATGACATTGAAATGATGGATTTTATTAAGGAGAAAGCACCATGGGAGTTAAATAATAATGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGGAATTTATTATTTAAAAGTGGCAAATATCAGCAAGCAGCGAAGAAGTATGATAAGGCTGCTGATTTTGTTATTGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCTAGCTAAATCGTTGAGAATTTCATGTTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTGAATGAATTTCCAGGAGCAATCAAACTATGTACTCAGGTGCTTGATGTTGAGTTTCACAATGTGAAAGCTTTGTATAGAAGAGCGCAAGCATACGTAGAGACCGAAGACTTTCTCTTGGCAGGTGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAGAACAGGGAGGTAAAGGTACTGAAGATGAAATTGAAGCAACTTCAAGCTAACAGTGACAAAAAAGATGCTAAACTGTATGAAAATATGTTTGCAAGTAAATCAAAGAGATTGAAAGTTGAGAAAGAAGAGGGTGAGGTGGTGAAACTAGAAACTGACAATGTCGGTGACAGCGCAGCGCCTTCTGATGGTGGTTTAATTATTGATTCTCGTTGA 1746 0.4244 MAVLSEIEEDELDEEPGEVIESAPPQKLGEERQLNSNSPIKKKLLKRGHGWETPNFNDQVTVHYVGTLLDGTKLGSTRDSDCPVTFTLGQGEVYAGLDDGIVTMKKGEVALFTLPAVESEGIPQDSNSVAQFEVELVSWITVVDVCKDGGIIKKIMEKGKGNDRPGDLDEVLVKYQVSLVDGTVVAETPEGGVEFYLKDGHFLLKLPKVIMTMTRGEKAELIVQPQYAFGEKGREAGSGFNSVPPDSVLHVNIELVSFKPVINVIGDSTVIKKILKEGEGTFTANEGANVTVSYTAMLEDGTVFEKRGIGETQPLKFVTDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVRQELAIVPPGSKVVYDIEMMDFIKEKAPWELNNNEKIEVAGRKKEEGNLLFKSGKYQQAAKKYDKAADFVIEDGSFGDDEQKLAKSLRISCWLNGAACCLKLNEFPGAIKLCTQVLDVEFHNVKALYRRAQAYVETEDFLLAGVDIKKALEVDPQNREVKVLKMKLKQLQANSDKKDAKLYENMFASKSKRLKVEKEEGEVVKLETDNVGDSAAPSDGGLIIDSR* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3613 581 MobiDBLite consensus disorder prediction 1 35 - -
Tpr1g3613 581 Gene3D - 143 259 IPR046357 GO:0003755
Tpr1g3613 581 SUPERFAMILY FKBP-like 35 141 - -
Tpr1g3613 581 Gene3D - 31 142 IPR046357 GO:0003755
Tpr1g3613 581 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Tpr1g3613 581 SMART tpr_5 396 429 IPR019734 GO:0005515
Tpr1g3613 581 SMART tpr_5 445 478 IPR019734 GO:0005515
Tpr1g3613 581 SMART tpr_5 479 512 IPR019734 GO:0005515
Tpr1g3613 581 MobiDBLite consensus disorder prediction 1 18 - -
Tpr1g3613 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 375 IPR001179 GO:0003755
Tpr1g3613 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 137 IPR001179 GO:0003755
Tpr1g3613 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Tpr1g3613 581 Gene3D Tetratricopeptide repeat domain 384 539 IPR011990 GO:0005515
Tpr1g3613 581 SUPERFAMILY FKBP-like 265 396 - -
Tpr1g3613 581 SUPERFAMILY FKBP-like 144 259 - -
Tpr1g3613 581 SUPERFAMILY TPR-like 391 541 IPR011990 GO:0005515
Tpr1g3613 581 MobiDBLite consensus disorder prediction 562 581 - -
Tpr1g3613 581 PANTHER PEPTIDYLPROLYL ISOMERASE 261 378 - -
Tpr1g3613 581 PANTHER PEPTIDYLPROLYL ISOMERASE 5 265 - -
Tpr1g3613 581 PANTHER PEPTIDYLPROLYL ISOMERASE 378 560 - -
Tpr1g3613 581 Coils Coil 515 535 - -
Tpr1g3613 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Tpr1g3613 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 261 378 - -
Tpr1g3613 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 265 - -
Tpr1g3613 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 378 560 - -
Tpr1g3613 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 259 IPR001179 GO:0003755
Tpr1g3613 581 Gene3D - 260 383 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3613 Tpr-Chr1 40305461 40312030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3613 27 542 Calmodulin-binding Proteins AT3G25230 54.198 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3613 K09571 - gmx:100798382 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3613 1 40305461 40312030 Tpr1g3613 1 40305461 40312030 ECH