LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g3606	ATGGAAAAGATCTGCGTCGCCGTTAGAGTTCGTCCTCTCGTTTCCACAGATTCCGTCAATGGAAGTTTCTGGAAGGTTGAAGATAACCGCATTTCTCTTCACAAGATCCATGGAACTCCATTCTCTGGCTCTTCTTATGCTTTCGATCATATATTCGATGAATCTAGCACGAATTCGAGTGTTTATGAGCATCTCACTAAGGATATCATTCTCGCTGCACTCAATGGCTTCAACGGGACTGCATTTGCTTATGGGCAGACAAGTAGTGGGAAAACGTTCACGATGAATGGTTGTGAGACTGACCCAGGAGTGATTCCTAGGGCAGTCAAAGATATATTTGCGAAAATTGAGACGATGTCTGAACGGGAGTTTTTAATTCGAGTTTCCTACATGGAGATTTATAATGAAGAGATTAATGACCTTCTTGTTGTTGAAAGTCAGAAATTGCAAATTCATGAGAGTCTGGAGCGGGGAGTATTTGTTGCAGGGCTGAGAGAGGAAGTTGTCAATAATGCTGAACAAGTGCTAGATCTCATTAAAGCAGGGGAAGCGAATAGGCACTTTGGTGAGACAAATATGAATGTAAGGAGTAGCAGATCGCATACAATATTTAGAATGGTGATTGAAAGCAAAGGGAAGGATTCCAATTCTTCGGATGATAGTTCAATAAATGACATTGTTCGAGTTTCAGTCTTGAATTTGGTAGATCTTGCTGGATCTGAAAGGATTGCAAAGACTGGAGCTGATGGAGTACGTTTGAAAGAAGGAAAATATATTAACAAGAGCTTGATGGTTCTAGGAAATGTTATTAATAAATTAAGTGAAGGTTCAAAACAAAGGGGGCATATTCCATATCGTGATAGTAAATTAACACGTATTCTCCAACCTGCTCTTGGTGGAAACGCCAAAACTTCTATTATTTGCACCGTAGCACCAGAAGAGGTTCACATTGAAGAAACAAAGGGAACTCTTCAGTTTGCTAGTAGAGCCAAACGAATCACCAATTGTGTTCAAGTTAATGAGATTTTGACAGATGCAGCCTTGTTAAAGCGGCAACAATTAGAGATAGAAGAGTTACGTAAGAAACTTCAGGGATCCCATGCTGGGGTGCTTGAGCAAGAGATTCTTAAACTTAGGAACGATTTGCTCAAGTATGAAATGGAGCGTGGGAAGCTGGAAATGGAACTGGAAGAAGAGAGGAAATCGCGTAATCAATGGATTAGCGAGCAACAGATGAAAATTGAAAATTCCAGTATTGCATCGTTCTCAGTCTCAGATTGTGGGACGAATGACAATCAGGGACCAAGATATTTGAGGAGGCAAGGGTTTAGGGAAGACTACAGTGACGTTAATAGTACATCCCATGGAGATATATTTAAATCTCCCTGTTTAAAGACAGCTAGTGCTTTTGTTGTCAAGCGATCAAAGCATTCAATATTGCCAGACAGTAGTCCTCTTCCTGATAGTAGTCCTCTTCCAGATGCTTTCAACAATGTGGCTGATGAAGATACATGGTTGAAAATGAACAATGGTTATGTTGCGAACCTTGATTCTCCCCAAACGACTCCCACTCGAAACTTTCAATCATTCCCACTAAGTGATACAACTCCTGGTTGTGCAAGTCAAGTTGAAAAGTATGAACGGGAAGTTCAAGATTTGAGAAGACAGCTAGAGCTTGCAAATGAAAAGATAAATGAACTGGAGAGAAAGCATTCAGAGGAAGTACTGTCAAGCAAGCAATTAATAGGCGAGATCCCAGACAATCAACAAGAAACACAACTAATTCAGGAATTGCCTCTAAGGTTATCGGAGTCTGTGGAAAATTATAAAGATAGCTTTGAGGAGGTTTTATCAGTAATGCAGAGATTTGCATTGGATGGAAAATTCTCAACTGAAAAAATGCTGTCAACCATGAGTGACATTGGTGCACAGTTATTTGCAGCTTTGGAAGGTCAGCTTACAATATTTACGAACGGTGAAAGGTCTTCCACTGCGAACTATGCTTTGATCCAAGAACCACAAAAAGAGTTTCATGAGAGGGTGAAGAATATAATAACATCATTGGAGTTATCAGAAAGCTCAATAACAAAAAATCAAGACAGGAATCCTTTGTGCAGCTGTGAACACAAGGACTCTGGTTTGGGAGGAGAAATTGATTCCTCAAAGGATGCATTGAATGAAAGATATGAAAGCTTGGAAAAGGAGTTATTACTTTTGAAGAATGAAAGAGACTCTTTGTTACAGAAGTTCTCTGAATCTTCTGATAAACTTGCAACTGTTTCAAGCGAAAAGGAAAATGTTTTGAAAGATTTAAACACTGAAGCACATAGAAGGAAAAAGCTAGAAGGGGAGGTTAAGCAATTTACTTCAGCTTTTGTCTGTCGTCAGAAATCACTTATTTCTTTGCGTAGTGACCTTAAGACCAAAATTGAGAAATGGAAAGCTGAGACACCAATTTCAGTGCCCAAGTCTTTTGGGTGTGAGGACTAA	2490	0.3964	MEKICVAVRVRPLVSTDSVNGSFWKVEDNRISLHKIHGTPFSGSSYAFDHIFDESSTNSSVYEHLTKDIILAALNGFNGTAFAYGQTSSGKTFTMNGCETDPGVIPRAVKDIFAKIETMSEREFLIRVSYMEIYNEEINDLLVVESQKLQIHESLERGVFVAGLREEVVNNAEQVLDLIKAGEANRHFGETNMNVRSSRSHTIFRMVIESKGKDSNSSDDSSINDIVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMVLGNVINKLSEGSKQRGHIPYRDSKLTRILQPALGGNAKTSIICTVAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQQLEIEELRKKLQGSHAGVLEQEILKLRNDLLKYEMERGKLEMELEEERKSRNQWISEQQMKIENSSIASFSVSDCGTNDNQGPRYLRRQGFREDYSDVNSTSHGDIFKSPCLKTASAFVVKRSKHSILPDSSPLPDSSPLPDAFNNVADEDTWLKMNNGYVANLDSPQTTPTRNFQSFPLSDTTPGCASQVEKYEREVQDLRRQLELANEKINELERKHSEEVLSSKQLIGEIPDNQQETQLIQELPLRLSESVENYKDSFEEVLSVMQRFALDGKFSTEKMLSTMSDIGAQLFAALEGQLTIFTNGERSSTANYALIQEPQKEFHERVKNIITSLELSESSITKNQDRNPLCSCEHKDSGLGGEIDSSKDALNERYESLEKELLLLKNERDSLLQKFSESSDKLATVSSEKENVLKDLNTEAHRRKKLEGEVKQFTSAFVCRQKSLISLRSDLKTKIEKWKAETPISVPKSFGCED*	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g3606	829	Pfam	Kinesin motor domain	9	333	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	SMART	kinesin_4	1	341	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	Coils	Coil	543	577	-	-
	Tpr1g3606	829	Coils	Coil	368	402	-	-
	Tpr1g3606	829	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	364	IPR027417	-
	Tpr1g3606	829	Coils	Coil	722	749	-	-
	Tpr1g3606	829	Gene3D	Kinesin motor domain	1	365	IPR036961	-
	Tpr1g3606	829	PANTHER	CENTROMERE PROTEIN E	2	808	-	-
	Tpr1g3606	829	PRINTS	Kinesin heavy chain signature	76	97	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	PRINTS	Kinesin heavy chain signature	191	208	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	PRINTS	Kinesin heavy chain signature	231	249	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	PRINTS	Kinesin heavy chain signature	283	304	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	PANTHER	CENTROMERE PROTEIN E	2	808	-	-
	Tpr1g3606	829	ProSiteProfiles	Kinesin motor domain profile.	3	333	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr1g3606	829	ProSitePatterns	Kinesin motor domain signature.	230	241	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Tpr1g3606	829	CDD	KISc_CENP_E	3	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g3606	Tpr-Chr1	40233977	40240526	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g3606	2	395	Miscellaneous Gene Families	AT4G39050	45.250	2.20e-93	314

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g3606	K11498		-	gmx:100804944	1191.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr1g3606	1	40233977	40240526	Tpr1g3606	1	40233977	40240526	ECH