Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3604 ATGGCAAATAATCCTCAACAACCTCCTTCTGGTATTCAGTTTCGGCCAGTGATTCATCCACAGCAAGGGCAACCATTTGTTCCAATGACTTCACAACAATTTGGACATACAGGGCATGCTGTTCCTTCGTCTAACGTCGGGATGCCTGTCATTCAGGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGACTCCAAGACAAATTCAGCCCGGTCATCCTGTGTCTTCATCACAGGGTATACCTATGCCATATATTCAAACAAACAGGCCACTGACATCTGTTCCACAACATGCACAGCAAGCTGTTCCCCACATAAGCAATCATATGCCTGGTTTGTCAGGAGCACCTCCTCAATCTTCATATACATTCGCACCATCGTATGGTCAGCAGCAAGACAATGCTAATGCATTGCCCCAATTCCAGCATCCGCCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGTCGTCCTCAGTACCTCAGAGTGCTGCAACTGTTACGCCAGTACAGCCGGCTGGAGTTCAATCATCTGGTACTGCATCAAATGATGCTGCAACTAATACCACTAACCAGAACTCTGCATCTGATTGGCAAGAGCATGTTGCTGGTGATGGGAGAAGATATTACTACAACAAGAATACAAGGCAATCTAGCTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCCGACGCGTCAACTGTCTGGAAAGAGTTCACTTCTTCAGACGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACATGGACAATACCAGAAGAACTCAAGCTGGCTCGTGAGCAGGCACATAAAACTATTAGCCAGGGGATGGTGTCAGAAACAAGTGACACATCCAATGCTACGGCCTCCTCTGCAGCAGCATCAACACCAGCTAATGCAGCTAGTTCCAACACTTTGACATCTAACGGTTTTGCTTCAAGCCCAACTTCTATTACACCAATTGTAGCTACTGATCAGCAACGGATGGTTTCTGGATTATCGGGGACCTCTGTTTCCCATTCTGTAGTCACTTCAAGTACCACAGGAGTTGAACCAAGCACTGCTGTAATTGTGAGCACTGCACCTACAACAGTTGCAGGAAGCTCAGGAGTAGCAGCCAGCTCACTTGATTCAAAAATTCCATCCATTGTTGAAAATCAAGCAACTCATGATTCTACTTCCTCTGTAAATGGAGCACCTCTTCAAGATATGGAGGAAGCCAAAAGAGGACTTCCTGTGGTTGGACCAACTAATGTGACTCCTTCAGCGGAGAAGACCAATGATGGTGAAACTTTTGTATATGCAAATAAGCAGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTCATTCTGATTGGTCGTGGGAACAGGCAATGAGAGAAATCATCAATGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTCAATGAGTATTTGGGCCAAAGGAAGAAGATAGAGGCTGAAGAGAAGCGCATAAAACAGAAAAAAGCCCGCGAAGAATTCACAAAGATGTTAGAAGAATGCAAGGAGCTAACATCATCCACAAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCTGTTGAAAGAGTAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAATTTCTGGAGTCCTGTGATTTTGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGGCTAGAGGATGATGATAGATGCTTACTACTTGAAAAACTTGACCGCTTGGTTGTTTACCAGGACTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACACAAAAGGATACAGAAGGAACGAATCCGTCGGGGTGAAAGGAAAAACCGTGACGCATTTCGCAAGTTGCTGGAAGAGCATATTGCTGATGGAGTTCTTACTGCTAAAACACAATGGCGAAATTATTGCTTGAAGGTGAAAGAGTTGCCTCAATATCAAGCTGTTGCATCAAATACATCTGGTTCTACTCCGAGAGATTTATTTGAGGATGTCTTTGAAGATCTTGAAAAGAAGTATCATGAAGACAAGACACTCATAAAAGACACACTGAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATTTGAGGACTTCAAGTCTGCTGTATTAGAAGAAGCTGCTTGCGAAACAATATCGGAAATCAATTTCAAGCTTTTATTTGAAGAGTTAGTAGAGAGAGCGAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGACGACTTTACTAACTTGTTATATTCATTCAAGGAAATTACTATTACTTCAATATGGGAGGATTGCAAGCCACTTTTTGAGGAGACACAAGAGTACAAGTCAATTGGGGACGAAAGCTCTAGTAGAGAAATTTTTGAAGAATACATTACATACTTAAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAAGAAAAGGCCAAGAAGGAAAAAGAAAGAGAAGAGAAAGAGAAACGGAAAGAGAAGGAGAAAAAAGAGAAGGACAGAGAACGTGAGAAAGAAAAATCAAAGGAACGACATAAGAAAGATGAATCAGATAGTGATAATCAAGACATTAGTGACAGCCATGGTTATAGAGAGGAGAGGAAAAAAGATAAGGAAAAGGAAAGGAAGCATCGGAGAAGGCATCAGAGCAGTATAGATGACGTGGATTCTGAAAAAGACGAGAAGGAAGAGTCAAGAAAATCGCGTAGACATGGAAGTGATCGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGATTCAGACAACGAGAGTCGGCATAAAAAACACAAGAGGGAGCACGGGGATGGTTCTAGGAGAACCGGATTGAATGACGATCTTGAAGATGGGGAGCTCGGTGATGATGGAGAGGTTTAG 3009 0.4271 MANNPQQPPSGIQFRPVIHPQQGQPFVPMTSQQFGHTGHAVPSSNVGMPVIQGQQLQYSQQMQQLTPRQIQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAQQAVPHISNHMPGLSGAPPQSSYTFAPSYGQQQDNANALPQFQHPPQMLAPPAGQPWSSSVPQSAATVTPVQPAGVQSSGTASNDAATNTTNQNSASDWQEHVAGDGRRYYYNKNTRQSSWEKPLELMSPLERADASTVWKEFTSSDGRKYYYNKVTQQSTWTIPEELKLAREQAHKTISQGMVSETSDTSNATASSAAASTPANAASSNTLTSNGFASSPTSITPIVATDQQRMVSGLSGTSVSHSVVTSSTTGVEPSTAVIVSTAPTTVAGSSGVAASSLDSKIPSIVENQATHDSTSSVNGAPLQDMEEAKRGLPVVGPTNVTPSAEKTNDGETFVYANKQEAKNAFKALLESVNVHSDWSWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRCLLLEKLDRLVVYQDYIRDLEKEEEEHKRIQKERIRRGERKNRDAFRKLLEEHIADGVLTAKTQWRNYCLKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVFEDFKSAVLEEAACETISEINFKLLFEELVERAKEKEEKEAKKRQRLADDFTNLLYSFKEITITSIWEDCKPLFEETQEYKSIGDESSSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERHKKDESDSDNQDISDSHGYREERKKDKEKERKHRRRHQSSIDDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPDSDNESRHKKHKREHGDGSRRTGLNDDLEDGELGDDGEV* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 848 1002 - -
Tpr1g3604 1002 Coils Coil 767 791 - -
Tpr1g3604 1002 SUPERFAMILY FF domain 570 639 IPR036517 -
Tpr1g3604 1002 SMART FF_2 443 497 IPR002713 -
Tpr1g3604 1002 SMART FF_2 510 565 IPR002713 -
Tpr1g3604 1002 SMART FF_2 785 840 IPR002713 -
Tpr1g3604 1002 SMART FF_2 652 713 IPR002713 -
Tpr1g3604 1002 SMART FF_2 578 632 IPR002713 -
Tpr1g3604 1002 Pfam FF domain 512 562 IPR002713 -
Tpr1g3604 1002 Pfam FF domain 445 494 IPR002713 -
Tpr1g3604 1002 Pfam FF domain 790 837 IPR002713 -
Tpr1g3604 1002 Pfam FF domain 581 629 IPR002713 -
Tpr1g3604 1002 Pfam FF domain 654 709 IPR002713 -
Tpr1g3604 1002 Gene3D FF domain 643 724 IPR036517 -
Tpr1g3604 1002 Gene3D FF domain 499 572 IPR036517 -
Tpr1g3604 1002 Gene3D FF domain 573 642 IPR036517 -
Tpr1g3604 1002 SUPERFAMILY FF domain 786 847 IPR036517 -
Tpr1g3604 1002 Coils Coil 559 588 - -
Tpr1g3604 1002 ProSiteProfiles FF domain profile. 443 497 IPR002713 -
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 279 308 - -
Tpr1g3604 1002 ProSitePatterns WW/rsp5/WWP domain signature. 199 224 IPR001202 GO:0005515
Tpr1g3604 1002 Gene3D FF domain 442 498 IPR036517 -
Tpr1g3604 1002 Coils Coil 626 646 - -
Tpr1g3604 1002 ProSiteProfiles FF domain profile. 510 565 IPR002713 -
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 924 948 - -
Tpr1g3604 1002 ProSiteProfiles FF domain profile. 650 713 IPR002713 -
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 153 198 - -
Tpr1g3604 1002 CDD WW 197 226 IPR001202 GO:0005515
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 848 917 - -
Tpr1g3604 1002 SUPERFAMILY FF domain 645 720 IPR036517 -
Tpr1g3604 1002 Gene3D - 192 235 - -
Tpr1g3604 1002 Gene3D - 236 279 - -
Tpr1g3604 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 6 997 IPR039726 GO:0045292
Tpr1g3604 1002 SMART ww_5 194 226 IPR001202 GO:0005515
Tpr1g3604 1002 SMART ww_5 235 267 IPR001202 GO:0005515
Tpr1g3604 1002 Gene3D FF domain 780 853 IPR036517 -
Tpr1g3604 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 6 997 - -
Tpr1g3604 1002 Coils Coil 838 890 - -
Tpr1g3604 1002 ProSiteProfiles FF domain profile. 578 632 IPR002713 -
Tpr1g3604 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 193 226 IPR001202 GO:0005515
Tpr1g3604 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 234 267 IPR001202 GO:0005515
Tpr1g3604 1002 ProSitePatterns WW/rsp5/WWP domain signature. 240 265 IPR001202 GO:0005515
Tpr1g3604 1002 SUPERFAMILY FF domain 436 497 IPR036517 -
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 957 991 - -
Tpr1g3604 1002 SUPERFAMILY WW domain 198 232 IPR036020 GO:0005515
Tpr1g3604 1002 SUPERFAMILY WW domain 227 268 IPR036020 GO:0005515
Tpr1g3604 1002 SUPERFAMILY FF domain 504 572 IPR036517 -
Tpr1g3604 1002 CDD WW 240 267 IPR001202 GO:0005515
Tpr1g3604 1002 Pfam WW domain 197 224 IPR001202 GO:0005515
Tpr1g3604 1002 Pfam WW domain 240 265 IPR001202 GO:0005515
Tpr1g3604 1002 MobiDBLite consensus disorder prediction 151 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3604 Tpr-Chr1 40218734 40229771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3604 K12821 - gmx:100806019 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3604 1 40218734 40229771 Tpr1g3604 1 40218734 40229771 ECH