Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3602 ATGGATCTTGGTGGTGTGAGTTTAGATGGGTTAGTTAATTCAGATCCTGAACAAAAGAACAAATGGTATAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACAACTGATCAACAACAACAGAGAAACTCTGTTTCACTTTTGAGATCTAATGCTACAACTATGTTTTCTGATGGTCAACACCAACAACAAATGCTTAGTTTTTCAACTCCAAATCCAAAATCAGATTCTTTTTTAGTTGATAAAACAGCCCAAAATGCTACATTGTCTTATGCTTATCTTCCAATGTCTGGTTATAACAGAAACACAGGTTACAGTTCTGGAAGCATGCATGGAGGTTTAAGTGGTGTTAGAGGACCATTTACACCTTCACAGTGGATGGAATTGGAACATCAAGCCTTGATCTATAAGTATATCACTGCTAATGTTGCTGTACCTCATCATTTGCTTATTCCTATAAAAAAAGCTCTTGATTCTGCTGGCTTATCTAGCTACTCAGCTGCACTCCTCAGACCTAATGCATTGGGATGGGGAGGATTTCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATAGTACAGCTACTACTAATGCTACTTCTACCATTACTCAAAGTGGTTCATCGAAGCAGATCAATGTTGCTGCTGTTACTGCTGCTGTTGCTGCTTCTCCTTCTTCATCTATTGTTATTCCTGGTGGCAACACTGCTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAATAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAGCACAAGTGAGAGGATGCAGGATGGTCCTGCGCTTCCAATGCTGCCTCCAACACTAGAGTTGAAACCAAAAGAAAATCACCCTTTTATGATTCAAAAACAGAACATTCCTTATGATGAATCCTCAAGGAACAACGAATTCGGCTTTGTCACTTCCGATTCCTTGCTTAACCCTTCACAGAAACCCCCCACCTTGCTTGGAACCCGAGCCTTTGGTTCATCATTGCAGAACACTACAAACCGAGACACCGGCTCTCAAAATTCCCTCAGGCATTTCATTGATGACTTTCCCAAAACACATTCCGATCATCATAACCGCTCGGGTGGTTTTTCTTGGCCAGAACTCGATATGCAGTCAGATAGGATACAACTATCAATTTCAACACCAATGACTTCCTCCGACTTCATGTCGTTCAATTCCTCAGGAACCAATGAAAAGCTCACACTTTCGCCTCTTAGGCTATCAAGGGAAATAGATCCTATTCAAATGGGGTTAGGTGTTGGAACTGGAAGTAGTACTCTCAATAACACCAACGAATCATCGAACCCTAGTACTAATGCTGCTACTAGACAAACTAATTGGATTCCAATAACTTGGGAAAGTTCAATGGGCGGTCCACTCGGTGAAGTACTTCATCTTAGTAGTAGTATTGCCTACAATGCAAGTGATGATCACTATGTTGGCGGCGGTGGCAGCAACAGCAACTCGGCGGCTCTAAACTTGATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATGGGATCATCGCCAACCGGGGTGCTTCAAAAGACCGCGTTCGGATCACTTTCCAATAGTAGCGCCGGTAGTAGTCCAAGGGCCGAGAACAATAAGACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACACTTGGTAATAATGCTTCCTTTACTCCTTAA 1977 0.4244 MDLGGVSLDGLVNSDPEQKNKWYNGSGLLKQERSGTCTEDELRSFKLAKTTDQQQQRNSVSLLRSNATTMFSDGQHQQQMLSFSTPNPKSDSFLVDKTAQNATLSYAYLPMSGYNRNTGYSSGSMHGGLSGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIKKALDSAGLSSYSAALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNSTATTNATSTITQSGSSKQINVAAVTAAVAASPSSSIVIPGGNTASNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNSTSERMQDGPALPMLPPTLELKPKENHPFMIQKQNIPYDESSRNNEFGFVTSDSLLNPSQKPPTLLGTRAFGSSLQNTTNRDTGSQNSLRHFIDDFPKTHSDHHNRSGGFSWPELDMQSDRIQLSISTPMTSSDFMSFNSSGTNEKLTLSPLRLSREIDPIQMGLGVGTGSSTLNNTNESSNPSTNAATRQTNWIPITWESSMGGPLGEVLHLSSSIAYNASDDHYVGGGGSNSNSAALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNASFTP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3602 658 Pfam QLQ 135 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr1g3602 658 ProSiteProfiles QLQ domain profile. 135 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr1g3602 658 PANTHER - 17 636 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tpr1g3602 658 ProSiteProfiles WRC domain profile. 204 248 IPR014977 -
Tpr1g3602 658 MobiDBLite consensus disorder prediction 617 639 - -
Tpr1g3602 658 MobiDBLite consensus disorder prediction 248 278 - -
Tpr1g3602 658 MobiDBLite consensus disorder prediction 518 537 - -
Tpr1g3602 658 PANTHER GROWTH-REGULATING FACTOR 9 17 636 - -
Tpr1g3602 658 MobiDBLite consensus disorder prediction 234 278 - -
Tpr1g3602 658 Pfam WRC 205 247 IPR014977 -
Tpr1g3602 658 SMART QLQ_2 134 170 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3602 Tpr-Chr1 40206148 40210481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3602 25 616 GRF Transcription Factor Family AT2G22840 39.708 2.99e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tpr1g3602 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3602 - - cam:101496763 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3602 1 40206148 40210481 Tpr1g3602 1 40206148 40210481 ECH