Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3600 ATGAAGTCCATGATGAATGATAGCAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGATTTTCTCTCTCACCTTACCAAATGGGAGAGATTACTTCTGAGTCTGACCTTTCTCATAATCCTAATAATCATCATCATTACTATCATCATGATAACCAAGTTTCTTCTTCTGCTGTTGTTCCCTCTAACTTCTACATGTCACCTTCAATGTGTTATGGTGTTGGACAAAACAGTAATTCCTTTCATTCTTCTTTATCTATGATGCCACTTAACTCTGATGGTTCACTTTGCATCATGGAAGAAGCTCTCACTAGATCACAATCACATGTGATGATGCCTCCAAAACTAGAGGATTTCCTAGGTGGTGCAACAATGGAAACACATCATGAGTATGAAGGACATGAAAGAGAAACAATGGCTTTAAGCTTAGACAGCATTTACTATAACAACAATGTTGAACAGCAAGATCATTCTTCATATTATTCAGAACTTGCATGTCATGGAATGTATCAACAAGCACCATTGTTAGAACAAGAAGAAAACAAGGAAGAAAACATTTTTTGCTTCAAGAACTTTGTGGCTCCTAGAGATTATTCTTTGGAACAACATCATCATCAAGTGAATAATAATGTTGTTGATGATGGTTCTGTTGGAACAGTTAATGGTTGTGGAGAGTTACAATCTCTAACCCTTTCAATGAGTCCTGGTTCACAATCAAGTTGTGTTACTGTTCCAACTCAGATTTCATCTTCTGGAAATGATTCTATGGTTGTTGAAGCTAAAAAGAGAGGTCATGGTAAAGTTGGAAAAAAGCAACCTGTTCATAGGAAATCTATTGATACATTTGGACAGAGAACTTCTCAGTTCAGAGGAGTTACAAGACATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACAAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGATTTGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTTAAGTATTGGGGTCCTTCAACACATATAAACTTCCCGCTTGAAAAATACCAAATTGAACTTGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCACTTGAGAAGAAAGAGTAGTGGATTTTCTAGGGGTGCATCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAGGGACCTTTATCTTGGCACATTCAGCACACAAGAGGAAGCAGCCGAATCATATGATGTAGCTGCAATCAAATTCCGTGGCCTAAACGCAGTCACAAACTTCGACATGTCTAAATACAATGTCGAAAAAATCATGGCTAGCAACACCCTTCTTGTCGGGGAACATGCTAGAAGAACAACGAAAAAAATTAAGGATTGTGAAGAACCAAAACCTGAGGCCAAAGAATGTAGCAACAATGTTGTTGTAACAAACCAAATCACAAATGGTGAAGAAATTGAAGCTGTGAACAACAATGAAACAAATAATTGGAATCAGTCCCCACAACAAGAGTCAAATACATGTGACCAAAAAACTGTAAAGTTTGGAAATTTTTCTATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGGAGGATCTAGCCAAGTTTTGGTAGATGATGATTCCACTAACAAGATGAAAAGGACTCATTTTTCAAATTCATCTTCACTTGTGACTAGTTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGTACTGGCCCCACTATGCTTTTTCCAAAACCTCCAATTGGGTCAAAAAATTTGAGTCCTATTGTTACTAATGTTGGTTCTTGGTTTCCTTCTAGTAGTACTATCTCAATGCCGCACTTTCCGGTTTTTGCGGCTTGGAGCGATGCTTAG 1929 0.381 MKSMMNDSNTSDDGNNHNWLGFSLSPYQMGEITSESDLSHNPNNHHHYYHHDNQVSSSAVVPSNFYMSPSMCYGVGQNSNSFHSSLSMMPLNSDGSLCIMEEALTRSQSHVMMPPKLEDFLGGATMETHHEYEGHERETMALSLDSIYYNNNVEQQDHSSYYSELACHGMYQQAPLLEQEENKEENIFCFKNFVAPRDYSLEQHHHQVNNNVVDDGSVGTVNGCGELQSLTLSMSPGSQSSCVTVPTQISSSGNDSMVVEAKKRGHGKVGKKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDLEEKAARAYDLAALKYWGPSTHINFPLEKYQIELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFDMSKYNVEKIMASNTLLVGEHARRTTKKIKDCEEPKPEAKECSNNVVVTNQITNGEEIEAVNNNETNNWNQSPQQESNTCDQKTVKFGNFSMSLQDIIGIDSVGGSSQVLVDDDSTNKMKRTHFSNSSSLVTSLSSSRECSPDNKSTGPTMLFPKPPIGSKNLSPIVTNVGSWFPSSSTISMPHFPVFAAWSDA* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3600 642 SUPERFAMILY DNA-binding domain 288 356 IPR016177 GO:0003677
Tpr1g3600 642 Pfam AP2 domain 289 347 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 Pfam AP2 domain 392 441 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 ProSiteProfiles AP2/ERF domain profile. 289 355 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 CDD AP2 288 355 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 SUPERFAMILY DNA-binding domain 390 451 IPR016177 GO:0003677
Tpr1g3600 642 SMART rav1_2 391 455 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 SMART rav1_2 289 361 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 Gene3D AP2/ERF domain 288 357 IPR036955 GO:0003700|GO:0006355
Tpr1g3600 642 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700|GO:0006355
Tpr1g3600 642 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 639 - -
Tpr1g3600 642 CDD AP2 390 451 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 PRINTS Ethylene responsive element binding protein signature 290 301 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 PRINTS Ethylene responsive element binding protein signature 431 451 IPR001471 GO:0003700|GO:0006355
Tpr1g3600 642 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3600 Tpr-Chr1 40160751 40165248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3600 12 477 AP2-EREBP Transcription Factor Family AT4G37750 53.069 8.75e-153 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tpr1g3600 AP2 9.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3600 K09285 - gmx:100798179 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3600 1 40160751 40165248 Tpr1g3600 1 40160751 40165248 ECH
Tpr1g3600 1 40160751 40165248 Tpr7g0832 7 7342983 7346801 PCT