Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3594 ATGGATCTGTATTTACTCGGTTGGATTTTAAGCTCCGTTTTGAGTCTGTTTGCGTTATACAGTTTGATTTACGATGGGAAGGAGAAGGTGAATCAGCGTGTGGATAGCGTGAAAAGTACTGATGCTGGAGAAATCAAATCGGAGAAACTTAACGGTGACGCTGATGTTATAATTGTTGGAGCTGGTGTTGCTGGTGCTGCTTTGGCTCATACTCTCGGAAAGGATGGACGTCGAGTGCATGTTATTGAAAGAGATCTGAGTGAGCCTGATAGAATTGTTGGAGAATTGCTACAACCTGGTGGCTATCTCAAATTAGTTGAACTCGGGCTTGAAGATTGTGTCAACAATATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTTCAAGGATGGAAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCGGATGTCTCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCATCCCTTCCCAATGTAAATTTGGAGCAAGGAACAGTCATTTCCCTACTTGAAGAGAAGGGGACAATCAAAGGCGTGCAATACAAGAATAAAGATGGTCAGGAATTGACAGCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGATCTCTTTGCAACCCTAAGGTAGATAATCCCTCTTGTTTTGTTGGCTTAGTTTTAGAGAACTGTGAACTTCCATGTGCGAATCACGGCCACGTCATACTTGGAGATCCTTCGCCAATTCTTTTCTATCCTATAAGTAGTTCAGAGGTTCGTTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCCTCTATTTCAAACGGTGATATGACAAAGTATCTAAAGACAACAGTTGCTCCGCAGGTCCCCCCTGAGCTATATGACGCATTCATAGCTGCAGTGGACAAAGGCAACATAAGGACAATGCCGAACAGAAGTATGCCAGCAGATCCTCGTCCTACTCCTGGAGCGGTACTGATGGGAGATGCATTCAACATGCGTCATCCACTAACAGGGGGAGGAATGACTGTAGCATTGTCTGATATTGTGGTGTTGAGAAATCTTCTCAGGCCTATGCGTGACCTGAATGATGCTCCCACACTTTGCAAATACCTTGAGTCCTTCTATACGTTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGAGCCCTTTACAAGGTTTTTAGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTAAGTCTTGGAGGCCTATTCTCGGAAGGACCGATCTCTTTACTTTCAGGATTAAACCCTCGACCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTTGCAGTATTTGGTGTCGGCCGTTTACTATTGCCATTTCCTTCACCTAAGCGGATGTGGATCGGAGCTCGATTACTCTCTGGTGCATCTGGAATCATCTTGCCCATAATTAAGGCCGAAGGAATTCGGCAGATGTTTTTCCCTGCCATGGTTCCAGCTTATTACAGAACTCCCCCAGCTTTACAAGAGTGA 1563 0.4472 MDLYLLGWILSSVLSLFALYSLIYDGKEKVNQRVDSVKSTDAGEIKSEKLNGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVNNIDAQKVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVNLEQGTVISLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSSEVRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPMRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRMWIGARLLSGASGIILPIIKAEGIRQMFFPAMVPAYYRTPPALQE* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3594 520 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 517 - -
Tpr1g3594 520 Pfam NAD(P)-binding Rossmann-like domain 58 84 - -
Tpr1g3594 520 Gene3D - 42 409 IPR036188 -
Tpr1g3594 520 SUPERFAMILY FAD/NAD(P)-binding domain 54 428 IPR036188 -
Tpr1g3594 520 Pfam Squalene epoxidase 205 477 IPR013698 GO:0004506|GO:0016021|GO:0050660
Tpr1g3594 520 PANTHER SQUALENE MONOOXYGENASE 1 517 IPR040125 GO:0004506|GO:0016126
Tpr1g3594 520 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Tpr1g3594 520 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 204 219 - -
Tpr1g3594 520 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 332 347 - -
Tpr1g3594 520 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 347 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3594 Tpr-Chr1 40087004 40091354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3594 39 520 Miscellaneous Gene Families AT1G58440 79.545 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3594 K00511 - gmx:100804406 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3594 1 40087004 40091354 Tpr1g3594 1 40087004 40091354 ECH
Tpr1g3594 1 40087004 40091354 Tpr7g0830 7 7303557 7308849 PCT