Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3587 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCTCCAGAAGAAGATACTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAATTGGATTGCTCTTCCACAAAAAATTGGTTTGAAGCGTTGTGGAAAGAGTTGTCGTCTAAGGTGGCTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTCTCCGAAGAAGAAGATAACATTATTTGTAGTCTTTACATTAGTATTGGAAGCAGGTGGTCGATAATTGCAGCACAATTGCCAGGAAGAACAGATAATGACATAAAAAATTATTGGAACACAAGGTTGAAAAAGAAGCTTTTGGGAAAACATCGTAAAGAACAACAACAACAAGCGCGTAATAGAGGCAACAATGGTGTTATGATTAAGCAAGAATGCAATATGAATCGTAGTGATCAATATTCCTTGTCAAATTTGGTTCAAGAACAATCATTTTTGCCACATGTAATGCAAAATATGCTATCAACACCTCCACCGCCGCCGCAGCTGCAGCCACAGCCACAGCCGCCAATGTTGTCATCATACACAAACCAAGGCTTCAATGATCAAGATTCTATTAGAAAACTACTTATCAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAGTACTAATAATAACTTTGATGGTTTGAATCTTCCATTCTCAAATGCTACTTCTTCATCTCATGAACAAGTTTATGATCAAGAACATATTGGATCTTCTACTTGTGTTAATTCTTCCAATGGTAACAATAATAACAACCAAGTACAATTTGTACAAAATGGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGAAAATTTATTCAAGAAATTGATCATATGGTATCTACTAATAATTTTCCACAAAGATTTGATGGGTTGGAATTCTTTTTTGGTGAAGAAGACATGAGTATTAACAATAAGATAGAAGGTTCAAGTACTAATTGGGGTGATGAAGCTACAACTTCAAGTTATCATCATCCTCTTGATTCAAAATACCAAGGTTAA 1047 0.362 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQQARNRGNNGVMIKQECNMNRSDQYSLSNLVQEQSFLPHVMQNMLSTPPPPPQLQPQPQPPMLSSYTNQGFNDQDSIRKLLIKLGGRFSGDYHPSTNNNFDGLNLPFSNATSSSHEQVYDQEHIGSSTCVNSSNGNNNNNQVQFVQNGQYFDSVQEEQGKFIQEIDHMVSTNNFPQRFDGLEFFFGEEDMSINNKIEGSSTNWGDEATTSSYHHPLDSKYQG* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3587 348 CDD SANT 71 113 IPR001005 -
Tpr1g3587 348 Gene3D - 70 140 - -
Tpr1g3587 348 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr1g3587 348 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tpr1g3587 348 Gene3D - 7 68 - -
Tpr1g3587 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr1g3587 348 CDD SANT 16 62 IPR001005 -
Tpr1g3587 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr1g3587 348 SMART sant 13 64 IPR001005 -
Tpr1g3587 348 SMART sant 67 115 IPR001005 -
Tpr1g3587 348 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr1g3587 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr1g3587 348 PANTHER OS09G0431300 PROTEIN 1 346 - -
Tpr1g3587 348 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 346 - -
Tpr1g3587 348 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3587 Tpr-Chr1 40025093 40027267 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3587 1 209 MYB Transcription Factor Family AT3G49690 63.636 1.46e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g3587 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3587 K09422 - gmx:778079 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3587 1 40025093 40027267 Tpr1g3587 1 40025093 40027267 ECH
Tpr1g3587 1 40025093 40027267 Tpr7g0824 7 7246586 7248441 PCT