Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3585 ATGGAGGAATACACAAATAATCCCAATCAAAATCAAAGTTCAAGGCCAAATTTCTTGTATTCTATTGCTAGTGGAAACAACCAACATCAAAACCAACACCATAATAATCAAATTCCAATGAACATGTTTCATGTTCAATCAAGTGGATCAGATCATTGTTTTCATCAACAACAACAACATACTGCTGTGAAAACTGAAGCAAATAGTAGTTCACAACTTCACACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTAATCCTCACAATAATAATATTATGCATAATCATCATCATCAAGGAGGTAGAGGAGGGAGTCCAAGCAGTTCTAGTAATGAAGCTGAAGCTATAAAAGCTAAAATAATTGCTCATCCTCAATACTCAAGTCTTTTACAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCACCGGATGTGGTGGCGCGTATGGTTGCGGCTAGGCAAGAGTTTGAAGCACGGCAAAGATCTTCAGTTAAATCCAGAGAAAATTCCAAAGATCCAGAACTAGATCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAAGAGAATTGAAACTCAGCTAAATACTCTTTGCAATGGCAATGGACCCCTTCGTATCTTCCCTGCTGAAGATAAAAATGAAGGCGCTGGTTCATCAGAAGAAGATCAAGAGAATAGTGGTGGAGAAACGGATCAACTTCCCGAGATTGATCCTCGAGCAGAAGACCGTGAACTGAAAAACCACTTGCTGAAAAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAAGCTAGGCAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAAGTAGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCTGCTCTTTATATGGATGGTCACTACATGGCCGATGGTCCCTACCGTCTAGGGCCATAA 1152 0.3837 MEEYTNNPNQNQSSRPNFLYSIASGNNQHQNQHHNNQIPMNMFHVQSSGSDHCFHQQQQHTAVKTEANSSSQLHTPIFHYPNLMRTNIINPHNNNIMHNHHHQGGRGGSPSSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKVGAPPDVVARMVAARQEFEARQRSSVKSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRIETQLNTLCNGNGPLRIFPAEDKNEGAGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3585 383 Pfam ELK domain 265 286 IPR005539 GO:0003677
Tpr1g3585 383 Pfam KNOX2 domain 174 219 IPR005541 GO:0003677|GO:0005634
Tpr1g3585 383 MobiDBLite consensus disorder prediction 233 259 - -
Tpr1g3585 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Tpr1g3585 383 Gene3D - 282 355 - -
Tpr1g3585 383 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Tpr1g3585 383 Pfam KNOX1 domain 119 161 IPR005540 GO:0003677|GO:0005634
Tpr1g3585 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Tpr1g3585 383 CDD homeodomain 297 349 IPR001356 GO:0003677
Tpr1g3585 383 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 375 - -
Tpr1g3585 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 375 - -
Tpr1g3585 383 SUPERFAMILY Homeodomain-like 286 360 IPR009057 -
Tpr1g3585 383 SMART KNOX1_2 118 162 IPR005540 GO:0003677|GO:0005634
Tpr1g3585 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Tpr1g3585 383 SMART ELK_2 265 286 IPR005539 GO:0003677
Tpr1g3585 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
Tpr1g3585 383 SMART HOX_1 287 352 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3585 Tpr-Chr1 40001820 40008852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3585 50 383 Homeobox Transcription Factor Family AT4G08150 70.414 2.52e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr1g3585 KNOX2 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3585 - - gmx:100800822 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3585 1 40001820 40008852 Tpr1g3585 1 40001820 40008852 ECH
Tpr7g0396 7 3267611 3268315 Tpr1g3585 1 40001820 40008852 ECH