Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3584 ATGTACCTCCGAAATATATATGACAGGGATTTGACGACACAAATAACTATAATGGCAGAAAGAATCTCTAGTGCAAGTTGGAGCAATGCTTCTAATATTTTGATGAATCACGACTTCTCTGATGGCCTGAACTATTGGTATCTCAATTGCTGCAATGGCTACGTGATTTCGGCCAGTGCCGGTGATCAAGGTGGAATTTCAATGGACTCGGATCAAAATTATACTGTTATCACCGAACGAAACGAATGCTGGCAAGGTCTTGGGCAAGATATAACGGACAGAATTTCCATTGGTTTCACTTACACGGTTTCAGCTTTTGTTGGAGTATCTGGCCCTTCACAGGAATCTGCTGAAGTAAAAGCTACACTGAAACTAGAATATGATGATTCAGCTACACAATATTTGTTCATCGGAAGAACTTCAGTTGTAAAGGGTAGCTGGGAAAAGTTGGAAGCAACATTTTCGCTGTCTACTGTCCCGAATCGGGCTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACTTGCTTATAAAATCAGTAGTGATCAATTGTTCCAGTCCAAATAACAAAAAGGCCACACACACAGAAGGATGTGTTTCTACTGAAGATGAAAACATCATAATAAACCCTCAATTTGAGGATGCCCTGAATAATTGGTTTGGAAGATCCTGCAAGATTGTGTTGACTGATTCCATGGCAAATGGTAAAATTGTCCCAAAGTTTGGAAAATTCTTTGCAAGCGCAGCAGAACGAACACAAGCCTGGAATGGAATTCAGCAGGAGATAACTGGACGCGTGCAGCGCAAGTTGGCCTATGAGATGACTGCTTTAGTTCGGATATATGGCAACAATGTCACTAGTGCTGATGTAAAGGCTACTTTGTGGGTTCAAACACCAGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATACAGATTGGGTGACGCTGCAGGGGAAATTCCTTCTAAATGGTTCATCATCAAAAGTGGTCCTTTATTTAGAGGGCCCTCCACCTGGAACAGACATTCTTGTCAATACTTTGGTTGTAAAACATGCTGCTAAAGCAACTCCTTCAACACCACTTAACAATGTTGCTTTTGGAGTCAATATAATTGAGAACAGCAATCTGTTAGATGACACCAGTGGATGGTTTACCCTAGGCGATTGTACTTTAACTGTTAAAACTGAATCGCCTCTTATAGTTCCACCTATAGCAAGAGACTCTCTTGGACGTCACGAAACCCTAAGTGGTCACTACTTACTTGTAACGAATAGAGCACAAACTTGGAATGGTCCTGCTCAGGTGATCACTGAGAAATTGAAGCTATTTGTGACTTACCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGTTCAAATAGGCAACAGAATGTGAATGTTGCCATTAGTGCTGACAACCAGTGGATCAATGGAGGACAAACCGAGGTTTCAGATAATAGGTGGCATGACCTTAATGGGTCATTCAGAATTGAGAAGCAGCCGTCAAAGGTTACGGTTTACATTCAAGGTCCTGCTTCAGGTATCGACTTGATGGTTGCTGGACTTCAGATTTTCCCTGTTGATAGGCAGGCAAGGTTTACATATTTGAAGACGCAAACAGACAAGATTCGGAAGCGTGAAGTTACACTAAAATTCTCTGGGCTAGACTCTAGCAGCTACCCTAACACCACAGTGAACGTTACACAAACACGGAACGATTTCCAGATTGGAACATGCATCAGCAGATCAAACATTGACAATGAAGATTTTGTTAACTTCCTTGTGAAACACTTCAATTGGGCTGTATTTAGAAATGAGTTGACGTGGGAAGTGACTGAGCCACAAAAAGGGATATTGAATTACAAGGATGCTGATGATCTTTTAAGCCTGTGTCAAAAGTACAATATCCAAACTCGTGGGCATTGCATCTTCTGGGAAATGGATAAAAGTGTTCAGCAATGGATTAAGTCACTGAATAAAAAAGATTTGATGACGGCTGTTCAAAACCGTTTAACCGGTCTTCTGACTCGCTACAAGGGTAAGTTCAATCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGGTTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTGGACTCGTCTGCTACATTATTTGTGAATGATTATCATATTGAAGATGGATGCGACACAACATCATGTCCTGAGAAATACATTCAACACATTCTGGATTTGCTAAAACAAGATGCACCCGTTGGTGGAATTGGAATTCAAGGTCATATAAATAGTCCAATTGGGCCTATTGTTCATTCTTCGCTTGATAAATTAGGTGTTTTTGGTTTACCTATATGGTTTACAGAACTTGATGTGTCTTCGATGAATGAACATGTGAGAGCTGATGATCTTGAAGTTATGCTCAGAGAAGCTTATGCTCACCCTGCTGTTGAAGGGATAATGTTATGGGGATTTTGGGAGTTGCTTATGTGTAGGGAAAATGCACATTTGGTGAATGCTGAAGGTGACATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTAAAACAAGAGTGGCTATCGCATACTCATGGTCATGTCGATGAGGAAGGTCATTTCAAATTTAAAGGTTTTTATGGAACTTATGATGTGGAAATTGTTACACCATCGAAGAAAATTGCCAAGTCATTTGTGCTTTATAAAGGCGACAATTCATTGGTTGTACCTATTAATTTATAA 2757 0.4052 MYLRNIYDRDLTTQITIMAERISSASWSNASNILMNHDFSDGLNYWYLNCCNGYVISASAGDQGGISMDSDQNYTVITERNECWQGLGQDITDRISIGFTYTVSAFVGVSGPSQESAEVKATLKLEYDDSATQYLFIGRTSVVKGSWEKLEATFSLSTVPNRAVFYLEGPAPGVDLLIKSVVINCSSPNNKKATHTEGCVSTEDENIIINPQFEDALNNWFGRSCKIVLTDSMANGKIVPKFGKFFASAAERTQAWNGIQQEITGRVQRKLAYEMTALVRIYGNNVTSADVKATLWVQTPDLREQYIGIANVQATDTDWVTLQGKFLLNGSSSKVVLYLEGPPPGTDILVNTLVVKHAAKATPSTPLNNVAFGVNIIENSNLLDDTSGWFTLGDCTLTVKTESPLIVPPIARDSLGRHETLSGHYLLVTNRAQTWNGPAQVITEKLKLFVTYQVSAWVRIGSGSNRQQNVNVAISADNQWINGGQTEVSDNRWHDLNGSFRIEKQPSKVTVYIQGPASGIDLMVAGLQIFPVDRQARFTYLKTQTDKIRKREVTLKFSGLDSSSYPNTTVNVTQTRNDFQIGTCISRSNIDNEDFVNFLVKHFNWAVFRNELTWEVTEPQKGILNYKDADDLLSLCQKYNIQTRGHCIFWEMDKSVQQWIKSLNKKDLMTAVQNRLTGLLTRYKGKFNHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDSSATLFVNDYHIEDGCDTTSCPEKYIQHILDLLKQDAPVGGIGIQGHINSPIGPIVHSSLDKLGVFGLPIWFTELDVSSMNEHVRADDLEVMLREAYAHPAVEGIMLWGFWELLMCRENAHLVNAEGDINEAGKRFLALKQEWLSHTHGHVDEEGHFKFKGFYGTYDVEIVTPSKKIAKSFVLYKGDNSLVVPINL* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3584 918 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 28 186 - -
Tpr1g3584 918 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 195 918 - -
Tpr1g3584 918 SMART glyco_10 614 862 IPR001000 GO:0004553|GO:0005975
Tpr1g3584 918 SUPERFAMILY Galactose-binding domain-like 32 186 IPR008979 -
Tpr1g3584 918 SUPERFAMILY Galactose-binding domain-like 373 533 IPR008979 -
Tpr1g3584 918 Pfam Carbohydrate binding domain 206 342 IPR003305 GO:0016798
Tpr1g3584 918 Pfam Carbohydrate binding domain 31 172 IPR003305 GO:0016798
Tpr1g3584 918 Pfam Carbohydrate binding domain 375 518 IPR003305 GO:0016798
Tpr1g3584 918 PANTHER GLYCOSYL HYDROLASE 195 918 IPR044846 GO:0004553|GO:0005975
Tpr1g3584 918 PANTHER GLYCOSYL HYDROLASE 28 186 IPR044846 GO:0004553|GO:0005975
Tpr1g3584 918 SUPERFAMILY (Trans)glycosidases 565 868 IPR017853 -
Tpr1g3584 918 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 565 861 IPR001000 GO:0004553|GO:0005975
Tpr1g3584 918 Gene3D Glycosidases 565 873 - -
Tpr1g3584 918 Pfam Glycosyl hydrolase family 10 575 832 IPR001000 GO:0004553|GO:0005975
Tpr1g3584 918 Gene3D - 199 358 - -
Tpr1g3584 918 Gene3D - 371 530 - -
Tpr1g3584 918 Gene3D - 25 184 - -
Tpr1g3584 918 SUPERFAMILY Galactose-binding domain-like 204 358 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3584 Tpr-Chr1 39974359 39982653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3584 22 918 Glycoside Hydrolase AT1G58370 65.155 0.0 1237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3584 - - gmx:100816678 1459.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3584 1 39974359 39982653 Tpr1g3584 1 39974359 39982653 ECH
Tpr1g3584 1 39974359 39982653 Tpr7g0818 7 7216475 7220806 PCT