Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3583 ATGAAGAGGTTCTTCACAAGTTGTCTCTCAAAGTGTCACAAGAAATCTCACTCTGATTCTGAGATAATGGCAGAAAGAATCTCTAGTGAAAGTTGGAGCAATGCTTATAATATTTTGATGAATCATGACTTCTCTGATGGTCTGAACTATTGGTATCTCAATTGCTGCGATGGCTACGTAATTTCGGGTGGTGCAGGTGATCAAGGTGGAATTTTGATGGACTCGGATCAAAATTATGCTGTTATCACCAAACGAAACGAATGCTGGCAAGGTCTCGAGCAAGATGTCACAGAGAGAATTTCCATTGGTTCCATTTACAGGGTTTCGGCTTTTGTTGGAGTATCTGGCCCTTCTCAGGAATCTGCTGAAGTAAAAGCTACACTGAAACTAGAATATGATGATTCAGCTACACAATATTTGTTCATCGGAAGAACTTCAGTTATAAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCGCTGTCTACTATACCGAAACGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACTTGTTTATAAAATCAATAGTGATCAATTGTTCCAGTCCAAAAAACAAAGCCACAAGCACAGAAGGATGTGTTTCTACTGAAGATGAAAATATCATTATAAACCCTCAATTTGAGGATGGCCTGAATAATTGGTCGGGAAGAGCCTGCAAGATTGTGTTGAATGATTCCATGGCAGATGGGAAAATTGTCCCAAAGTCTGGAACAGTCTTTGCGTGCGCAGCAGAACGAACACAAGCCTGGAATGGAATCCAGCAGGAGATAACTGGACGTGTGAAGCGCAAGTTGGCCTATGAGCTCACTGCTTTAGTTCGGATATATGGCAACAATGTCACAAGTGCTGATATACGGGCTACTTTGTGGGTTCAAACACCAGATCTCCGGGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGAAACAGATTGGGTGACGCTGCAGGGAAAATTCCTTCTAAATGGTTCCTCATCAAAAGTGGTCCTTTATTTAGAAGGCCCTCCACCTGGAACGGACATTCTTGTCAATACTTTGGCTGTAAAACATGCTGATAAAGCAATTCCTTCGACACCAATAGACGTAAAGAATGTTGCTTTTGGCGTCAATATAATTGAGAACAGCAATCTGTCTGATGCCACCAAAGGATGGTTTCCCCTTGGCAATTGTACTTTAACTGTTAAAACTGGTTCCCCTCATATAATTCCACCTATGGCAAGAGATTCTCTTGGACGTCACGAACTCCTAAGTGGTCGCTACATACTTGTAACAAATAGAGCACAAACTTGGAATGGTCCTGCTCAGGTGATCACTGAGAAATTGAAGCTATTTTTGACTTACCAAGTATCTGCTTGGGTTAGGATTGGTTCTGGTTCAAATGGGCCTCAGAATGTGAATGTTGCCATTGGTGCTGACAACCAGTGGATCAATGGAGGACAAACCGAAATTTCAGATGACAGGTGGCATGAAATTGGTGGATCATTCAGAATTGAGAAACAACCATCAAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTGGACTTGATGGTTGCTGGACTTCAGATTTTCCCTGTTGATAGACATGCAAGGTTTAGATATTTGAAGATACAAACAGACAAGATTCGTAAACGTGATGTTGTACTGAAATTTTCTGGGCTGGACTCTAGCAGCTACCTTAACACCATGGTGCAAGTTAGACAAACACAGAACGATTTCCCGATTGGAACATGCATCAGTAGATCAAACATTGACAATGAAGATTTTGTTAACTTCCTTGTGAAACACTTCAACTGGGCTGTATTTGGAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTTAATTATAAGGATGCTGATGATCTTTTAAGCCTGTGTCAAAAGTACAAGATCCAAACTCGTGGACATTGCATCTTCTGGGAAGTGGAAGAAACTGTTCAGCAATGGATTAAGTCACTGAATAAAAATGATTTGATGACGGCTGTTCAAAACCGTTTAACCGGTCTTCTGACTCGCTACAAGGGTAAGTTCAATCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGGTTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGACTCGTCTGCTACGTTGTTTGTGAATGATTATCATATTGAAGATGGATGCGACACAAGATCATGTCCAGATAAATACATTCAACACATCCTTGATTTGCAAGAACAAGGTGCACCAGTTGGTGGAATTGGAATTCAAGGTCACATAAATAGTCCAATTGGGCCTGTTGTTTGTTCTTCGCTTGATAAATTAGGTATTCTTGGTTTACCTATATGGTTTACGGAACTTGATGTATCTTCTATGAATGAATATGTGCGAGCTGATGATCTTGAAGTTATGCTTAGAGAAGCTTTGGCTCACCCTGCTATTGAAGGGATAATGTTGTGGGGATTTTGGGAGTTGTTTATGAGTAGAGACAGTGCACATTTGGTGAATGCAGAAGGTGACATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCATAGTCATGGTCATGTTGATGAGCAAGGTCATTTCAATTTCAGAGGGTTTTATGGAACTTATAATGTGGAAGTTGTGACACCATCAAAGAAAATTGCTAAGACATTTGTGCTTGATAAAGGCGACTCTCCAATGGTGGTATCTATTGATTTATAA 2775 0.4047 MKRFFTSCLSKCHKKSHSDSEIMAERISSESWSNAYNILMNHDFSDGLNYWYLNCCDGYVISGGAGDQGGILMDSDQNYAVITKRNECWQGLEQDVTERISIGSIYRVSAFVGVSGPSQESAEVKATLKLEYDDSATQYLFIGRTSVIKGSWEKLEGTFSLSTIPKRVVFYLEGPAPGVDLFIKSIVINCSSPKNKATSTEGCVSTEDENIIINPQFEDGLNNWSGRACKIVLNDSMADGKIVPKSGTVFACAAERTQAWNGIQQEITGRVKRKLAYELTALVRIYGNNVTSADIRATLWVQTPDLREQYIGIANVQATETDWVTLQGKFLLNGSSSKVVLYLEGPPPGTDILVNTLAVKHADKAIPSTPIDVKNVAFGVNIIENSNLSDATKGWFPLGNCTLTVKTGSPHIIPPMARDSLGRHELLSGRYILVTNRAQTWNGPAQVITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVAIGADNQWINGGQTEISDDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKRDVVLKFSGLDSSSYLNTMVQVRQTQNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKYKIQTRGHCIFWEVEETVQQWIKSLNKNDLMTAVQNRLTGLLTRYKGKFNHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSSATLFVNDYHIEDGCDTRSCPDKYIQHILDLQEQGAPVGGIGIQGHINSPIGPVVCSSLDKLGILGLPIWFTELDVSSMNEYVRADDLEVMLREALAHPAIEGIMLWGFWELFMSRDSAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEQGHFNFRGFYGTYNVEVVTPSKKIAKTFVLDKGDSPMVVSIDL* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3583 924 PRINTS Glycosyl hydrolase family 10 signature 649 661 IPR001000 GO:0004553|GO:0005975
Tpr1g3583 924 PRINTS Glycosyl hydrolase family 10 signature 731 742 IPR001000 GO:0004553|GO:0005975
Tpr1g3583 924 PRINTS Glycosyl hydrolase family 10 signature 763 775 IPR001000 GO:0004553|GO:0005975
Tpr1g3583 924 SUPERFAMILY Galactose-binding domain-like 36 191 IPR008979 -
Tpr1g3583 924 SUPERFAMILY (Trans)glycosidases 573 875 IPR017853 -
Tpr1g3583 924 Pfam Glycosyl hydrolase family 10 581 838 IPR001000 GO:0004553|GO:0005975
Tpr1g3583 924 Gene3D - 377 536 - -
Tpr1g3583 924 Gene3D - 31 189 - -
Tpr1g3583 924 Gene3D - 203 362 - -
Tpr1g3583 924 SUPERFAMILY Galactose-binding domain-like 379 539 IPR008979 -
Tpr1g3583 924 Gene3D Glycosidases 570 880 - -
Tpr1g3583 924 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 569 867 IPR001000 GO:0004553|GO:0005975
Tpr1g3583 924 PANTHER GLYCOSYL HYDROLASE 39 189 IPR044846 GO:0004553|GO:0005975
Tpr1g3583 924 PANTHER GLYCOSYL HYDROLASE 201 924 IPR044846 GO:0004553|GO:0005975
Tpr1g3583 924 SUPERFAMILY Galactose-binding domain-like 208 364 IPR008979 -
Tpr1g3583 924 Pfam Carbohydrate binding domain 37 177 IPR003305 GO:0016798
Tpr1g3583 924 Pfam Carbohydrate binding domain 210 346 IPR003305 GO:0016798
Tpr1g3583 924 Pfam Carbohydrate binding domain 381 524 IPR003305 GO:0016798
Tpr1g3583 924 PANTHER - 39 189 - -
Tpr1g3583 924 PANTHER - 201 924 - -
Tpr1g3583 924 SMART glyco_10 618 868 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3583 Tpr-Chr1 39968034 39973878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3583 1 924 Glycoside Hydrolase AT1G58370 66.103 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3583 - - gmx:100816678 1586.24