Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3581 ATGGATTTCATGAAAGTTTTCGATCAAACCGTTCGAGAAATAAAGAGAGAGGTGAATTTGAAGGTGCTTAAGGTTCCTGAAATCGAACAAAAGGTTTTGGATGCAACTGATGATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTGCAACGGCTACCAAAAAATTTACTGAATGTCAGCTGGTTATGAATGTTCTTTGGACAAGATTGAGTGAAACTGGAAAGGATTGGCGATATGTATACAAGGCATTAGCTGTTATAGAGTATTTGGTATCACATGGATCTGAACGTGCAGTAGATGACATTATAGAACATACTTTTCAGATCTCTGCACTTTCTAGTTTTGAATATGTTGAGCCTAGTGGGAAGGATGTAGGACTCAATGTAAGGAAGAAGGCAGAAAACATTGTAGCCCTTTTGAATGATAGAGAAAAGATACATGATGTCAGAAATAAAGCTGCTGCAAATCGTGACAAGTATATTGGAGTTTCATCTAGTGGAATGACATACAAATCCGGGACAACCTCATTTAGTAGTGCGAGTTCCCATAGCAGTAGTAAATATGGAGGCTTTGGTTCAAGTGGCGATAGGTTTAGTGATAGCTACGGAGACAAGGGGCGCTATGATGAAGCAAAAGTAGACAAAGATTACTCAGGAAAATCACGCTATGGTGTCTCAAGTTACGATGAAGAGAACTCCTTCAAAAAGGGTTCTGCACGGTCTGTCAGCAAAAGTAATGAGAAGATATCATCTAGATCATCAAAGTCATCTGCTAATGCAAGTTCAGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAACAATGCCGAGGATGACTTTGATGATTTTGATCCGAGAGGAACATCTACTAAGGCTTCAGCTGGAAGCTCAAACCAGGTTGATCTCTTTGGACAAGATTTGATTGGTGACTTCATGGATGCTCCAACATCAGTTTCTGTAGATAAGCCAGCAACTAGTGATGTGTCTGCGGTTGATCTCTTTGCAGATGCGGCATTTGTATCAGCACCATCACATTTGGACAAAGGAGCTAGTTCTCAACCACAGGATGAAGTGGATCTCTTTTCTTCACAACCAGCCATTCCTTCAGTTACACCGACAGTTGACTTGTTTTCCATTCCTGCACCAGCTGTGCAGCCTGACAGCAAGTCGGAAAACTCTGCTCCTGTGAATAACAGCACTTTTGATCCATTCGCTTCCGTTCCACTTAATAATTTTGATGGATCTGATGTTTTTGGTGATTTTACTTCTCAATCTGATTCTGTACCTTCACAGCCCTCAACTAATGTTGTCACCGATGGTAGTGTAAGTGCTAAATCCTTGGCAGAATCTAATGTTTCAACTAAAAAGGATGCTTTTCAGGTGAAGTCTGGCATTTGGGCTGATTCACTAAGCCGTGGATTGATTGACCTCAATATATCTGCTCCCAAAAAAGTATCCCTTGCAGATATTGGAATTGTGGGTGGATTGAATGATGGATCAGATGAAAGGGAGAAGGGCCCTCCAGCTACATTTTACATGGGGAGAGCCATGGGTTCAGGATCCGGTCTTAGTATGTATGGTGGCACTCCTTCACAGCAAACACCGGAAGACGACTTATTTTCAAACTTTGGCAGCCAAAACTATCAATTTGGTGGGTTCCAAAAGTAA 1671 0.4171 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGTVLAEIATATKKFTECQLVMNVLWTRLSETGKDWRYVYKALAVIEYLVSHGSERAVDDIIEHTFQISALSSFEYVEPSGKDVGLNVRKKAENIVALLNDREKIHDVRNKAAANRDKYIGVSSSGMTYKSGTTSFSSASSHSSSKYGGFGSSGDRFSDSYGDKGRYDEAKVDKDYSGKSRYGVSSYDEENSFKKGSARSVSKSNEKISSRSSKSSANASSVPSQSSSVPANNAEDDFDDFDPRGTSTKASAGSSNQVDLFGQDLIGDFMDAPTSVSVDKPATSDVSAVDLFADAAFVSAPSHLDKGASSQPQDEVDLFSSQPAIPSVTPTVDLFSIPAPAVQPDSKSENSAPVNNSTFDPFASVPLNNFDGSDVFGDFTSQSDSVPSQPSTNVVTDGSVSAKSLAESNVSTKKDAFQVKSGIWADSLSRGLIDLNISAPKKVSLADIGIVGGLNDGSDEREKGPPATFYMGRAMGSGSGLSMYGGTPSQQTPEDDLFSNFGSQNYQFGGFQK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3581 556 Gene3D - 19 165 IPR008942 -
Tpr1g3581 556 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Tpr1g3581 556 MobiDBLite consensus disorder prediction 230 276 - -
Tpr1g3581 556 Pfam ENTH domain 27 147 IPR013809 -
Tpr1g3581 556 SMART enth_2 26 152 IPR013809 -
Tpr1g3581 556 CDD ENTH 28 144 - -
Tpr1g3581 556 SUPERFAMILY ENTH/VHS domain 24 165 IPR008942 -
Tpr1g3581 556 PANTHER EPSIN/ENT-RELATED 1 547 - -
Tpr1g3581 556 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 547 IPR033521 GO:0006623|GO:0030276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3581 Tpr-Chr1 39942933 39949517 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3581 K12471 - gmx:100809198 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3581 1 39942933 39949517 Tpr1g3581 1 39942933 39949517 ECH