Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3580 ATGGCTTCTTCTCCTCCTCGTTCTCCGTCGCAATCTTCTTCTCCAACTCCTCCTACTTCCTACGTCACTCATCTTCCCATTGCTCCTTCTTCTCCTTCTCATTCCAGTGAGAAGATTCTGGAAGAAGAGCAGCCGAGAGTTCCGATTCATATCGTTACAGAAGCCTATCAACTTCCAGTAGATTTTCTTGAACCTTCGCCTCAAGCGAAACTTGTTATTGGTTTTGATTGTGAGGCTGTTGACTTGTGTCGTTATGGAACTCTTTGCATAATACAGCTTGCATTTCCTGATGCTATATACCTGGTTGATGCAATAGAAGGGGGAAAAGTACTTATCGAAGCCTGTAAGCCTGCACTTGAGTCTGATTTTATCACTAAAGTGATTCATGATTGCAAACGCGACAGTGAGGCATTGTACTTTCAGTTCGGCATCAAGTTAAACAACGTGGTGGATACCCAGATTGCTTACTCGCTTTTAGAAGAGCAAGAAGGACAAAAGAGATTGCCAGATGACTATATTTCACTTGTCGGTCTCCTTGCAGATCCACGCTATTGTGGCTTATCACATGTTGACAAGGAAGAAGTTCGTGTCCTCCTTCGACAGGATCCCAACTTTTGGACTTACAGACCTTTATCTGAACAAATGATTCACTCTGCTGCTGATGATGTCCGTTTCCTTCTCTACATTTATCACCAAATGATGGCAAAATTAAATGAAAGGTCTTTATGGCATCTTGCTGTTCGTGGTGCCTTGTACTGCCGGTGTTTCTGTGTAAACAGTAATGACTATGCTGATTGGCCGTCTCTACCTCCAATTCCAGGTCTTCAAAATCTGGTCGACAATATATTATATATGCTGAACATTGATGGAAATGGTCCTGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCTCCAGGAAAGATGGGATGCATTATTGGCAAAAAAGGGGCTTCGATTATGGCAATTAAGGAGTCTTGCAATGCGGAAATTCTCATTGGAGGTCCCAGGGGTCCACCTGACAAGGTCTTCATCATTGGACCAGTGAAGCAGGTGAAGAAAGCTGAGGCCATGTTAAGGGGTAGACTATTGCCTGTCTTCTAG 1101 0.4332 MASSPPRSPSQSSSPTPPTSYVTHLPIAPSSPSHSSEKILEEEQPRVPIHIVTEAYQLPVDFLEPSPQAKLVIGFDCEAVDLCRYGTLCIIQLAFPDAIYLVDAIEGGKVLIEACKPALESDFITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQKRLPDDYISLVGLLADPRYCGLSHVDKEEVRVLLRQDPNFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLNERSLWHLAVRGALYCRCFCVNSNDYADWPSLPPIPGLQNLVDNILYMLNIDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMAIKESCNAEILIGGPRGPPDKVFIIGPVKQVKKAEAMLRGRLLPVF* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3580 366 CDD Egl_like_exo 61 257 - -
Tpr1g3580 366 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 292 362 IPR036612 GO:0003723
Tpr1g3580 366 CDD KH-I 301 358 - -
Tpr1g3580 366 ProSiteProfiles Type-1 KH domain profile. 296 358 - -
Tpr1g3580 366 SMART 35exoneu6 49 238 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr1g3580 366 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g3580 366 Gene3D - 3 255 IPR036397 GO:0003676
Tpr1g3580 366 PANTHER EGALITARIAN, ISOFORM B 22 362 - -
Tpr1g3580 366 Pfam KH domain 301 359 IPR004088 GO:0003723
Tpr1g3580 366 SUPERFAMILY Ribonuclease H-like 17 266 IPR012337 -
Tpr1g3580 366 Gene3D K Homology domain, type 1 300 363 IPR036612 GO:0003723
Tpr1g3580 366 Pfam 3'-5' exonuclease 68 237 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr1g3580 366 PANTHER - 22 362 - -
Tpr1g3580 366 SMART kh_6 295 363 IPR004087 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3580 K18740 - gmx:100788577 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3580 1 39936468 39941933 Tpr1g3580 1 39936468 39941933 ECH