Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3573 ATGGACCTTTCCCAATTTCCCACTATCCTCTTTTTCATTGTCATCCTCACCACCCTTGCTGCCGTCTCCGGTAGCCGTGACCTTCCCGGAGACTATATCCGATTGCCTTCTCAAGCCTCCAAGTTCTTCCATGAACCTGAAAATGATGACAACGTTCAAGGAACTAGATGGGCTATCTTACTTGCTGGTTCTAATGGTTACTGGAATTATAGGCATCAGGCTGATGTTTGCCATGCATATCAAATATTGAAGAAAGGTGGCTTAAAAGATGAAAACATTATTGTTTTCATGTATGATGACATTGCTTCCAATTACGAGAATCCAAGGCCTGGTGTCATAATTAACAAGCCAGATGGTGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGTGCAGAAGTACATGCTGACAATTTCTATGCTGCTTTACTTGGAAATAAATCAGCTCTTACAGGTGGGAGTGGGAAAGTTGTGGATAGTGGCCCCAATGATCATATTTTTGTATACTACACTGATCATGGAGGTCCTGGTGTTCTTGGTATGCCTGTTGGTCCTTACCTGTATGCATCTGATCTGAATGAAGTCTTAAAGAAAAAGCATGCTTCTGGAGGATATAAGAGCCTAGTATTTTATCTTGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTACCGGAAGATATCAATATCTACGCGACAACAGCTTCGAATGCAGAAGAAAGCAGTTGGGGAACATATTGCCCTGGCGAGTACCCTCCCCCTCCCCCGGAGTACTCAACCTGCTTGGGTGACCTATACAGCATTGCTTGGATGGAAGACAGCGACGTACACAATTTGCGAACTGAAAGTTTGCAGCAGCAATATAAATTGGTTAAGGATAGGACTATCAATGGTGCATACTATGGTTCTCATGTGATGGAATATGGTGATGTAGGACTTGGCAACAATCATCTTTTCCTATATTTGGGAACAAATCCTGCTAATGATAACATTAGTTTTGTGGATGAAAGCGCCTTGAAATTGAGATCACCTTCAACAGCAGTTAACCAAAGGGATGCCGATCTCGTCCATTTCTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCCGCGGAAAAATGAAGCTCAGAAACAAGTTTTGGAAGCAATGTCTCACAGGATGCATGTAGACAACAGTGTGGAACTGATTGGGAAGCTCTTATTCGGCATTGAAAAGGGTCCTGAAGTGGTCAACGCTGTTAGACCTTCTGGATCACCACTTGTTGATAACTGGGACCTTCTTAAAACCACGGTAAGGACTTTTGAGACACATTGTGGATCTCTATCTCAGTATGGTATGAAACATATGAGGTCCTTTGCGAACATCTGCAATGCAGGAATATCGAATGAGCAAATGGCCGAGGCCTCAGCACAAGCTTGTGCTAGTATTCCTGCCAACCCCTGGAGTTCTCTGCAAGGGGGTTTCAGTGCATAG 1479 0.4375 MDLSQFPTILFFIVILTTLAAVSGSRDLPGDYIRLPSQASKFFHEPENDDNVQGTRWAILLAGSNGYWNYRHQADVCHAYQILKKGGLKDENIIVFMYDDIASNYENPRPGVIINKPDGGDVYEGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGGYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAEESSWGTYCPGEYPPPPPEYSTCLGDLYSIAWMEDSDVHNLRTESLQQQYKLVKDRTINGAYYGSHVMEYGDVGLGNNHLFLYLGTNPANDNISFVDESALKLRSPSTAVNQRDADLVHFWDKFRKAPEGSPRKNEAQKQVLEAMSHRMHVDNSVELIGKLLFGIEKGPEVVNAVRPSGSPLVDNWDLLKTTVRTFETHCGSLSQYGMKHMRSFANICNAGISNEQMAEASAQACASIPANPWSSLQGGFSA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3573 492 PANTHER HEMOGLOBINASE FAMILY MEMBER 1 491 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PANTHER VACUOLAR-PROCESSING ENZYME 1 491 - -
Tpr1g3573 492 Pfam Peptidase C13 family 56 325 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PIRSF AE 4 492 IPR043577 GO:0004197|GO:0051603
Tpr1g3573 492 PRINTS Hemoglobinase (C13) cysteine protease signature 57 81 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PRINTS Hemoglobinase (C13) cysteine protease signature 82 111 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PRINTS Hemoglobinase (C13) cysteine protease signature 129 144 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PRINTS Hemoglobinase (C13) cysteine protease signature 157 176 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 PRINTS Hemoglobinase (C13) cysteine protease signature 206 222 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 Gene3D - 54 349 - -
Tpr1g3573 492 PIRSF Legumain 4 492 IPR001096 GO:0006508|GO:0008233
Tpr1g3573 492 Gene3D - 352 480 IPR046427 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3573 Tpr-Chr1 39861171 39866340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3573 K01369 - gmx:547700 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3573 1 39861171 39866340 Tpr1g3573 1 39861171 39866340 ECH