Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1072 ATGAAGTCCTTGAATGATAGTAACAACAACGATGCCACTGGTAATGCTAATCATCATCCTAACTGGTTGGGCTTTTCTCTCTCACCCCACATGAAAATGGAGCTAACTTCTCCCCCTCCTCTCCATCATcactatcatcatcatcatcagccccaagcttctgcttctgcttctacTGCACCTCTTGCTGTTTCCTCCTCCGCCTCTGTTCCCACAACTTTCTGTTTGTCTCCTTCTCACCTCACCACCAGCTACGGAGGAATATGTTATGCTTCTGCAACAGATAACTCTCCCTTTCACTCTCCTCTCTCCGTTATGCCTCTCAAGTCTGATGGCTCACTTTGCATCATGGAAGCTCTCACTAGATCACAATCTCAAGCCATGGTGCCGACTTCGTCTCCCAAGCTGGAGGACTTCCTAGGTGGTGCAACTATGGGAGCACACGACTATGGAAGCAGTGACAGAGCAGCAATGGCTCTTAGCCTTGACAGCATCTACTACAGCACCCAAAATGCAGCAGAAACTCATGACGAAACCCATAGAGACCACTCTCTGGACTTTCTCTCTGAACCATTTAGGAACCAACAAGACCACATTTCTCTCCAATCCCATCCTTTCTATTCCGGAATTGCTTATCATCCCTTATACCAAACACCACCTATGGCCGAGGAAGGCATTgcttgtttcaaaaactggggGGTGGCTCCTAGAGACTACTCCACACAACAAACTGTGGAGCACAAGAAGAATAATGGAAGCATGGTGGATGATAGTGGAGCTTCTGGGTCTGTTGGGAAAGTAGGGTGTGGAGATTTGCAGTCTCTGAGTTTATCTGTGAGCCCTGGTTCACAGTCCAGCTGTGTGACTGCGCCGCAGCAGATCTCCCCCTCTGGGACGGATGTGGTGGTGGCCATGGATGCCAAGAAGAGAAGTGCTGGCAAGTTAGGGCAGAAGCAGCCTGTTCACAGGAAGTCTATTGACACATTTGGGCAGAGAACGTCTCAGTATAGAGGTGTAACCAGGCACAGGTGGACTGGTAGATATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGAAGACAAGGGGGCTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCGGCCCTCAAGTACTGGGGACCCTCAACGCATATTAACTTTCcgTTGGAAAATTACCATGTAGAGCTTGAAGAGATGAAGAACATGAGCAGGCAAGAATACGTTGCTCACTTGAGAAGGAAAAGCAGTGGATTTTCAAGGGGGGCTTCAATGTACAGAGGAGTGACAAGGCACCACCAACACGGAAGATGGCAAGCGAGGATAGGTAGAGTTGCAGGAAACAAGGACCTTTATCTTGGGACATTCAGCACACAGGAGGAAGCAGCGGAAGCATACGACATAGCAGCAATCAAATTCCGTGGGGTAAATGCAGTGACAAACTTCGACATATCAAGATACGACGTGGAGAGGATAATGGCGAGTAATACACTTCTGGCTGGTGAGTTGGCTCGCAGAAACAAAGAGAGGGAGCCGCCGAGAACAAGCGAATTAGCAGCAGCGGCTAATATGATGATGCAGAGCAATAATGGGGAGGCAGTAGTGCAAGTCCAAGGGCAAAGAAACAGCAACGGGGAAAACGGGTCGGAGTGGAAGATGGTGTATAATGAGTCAAATAATAGCAGCTGCGATCAAAAAAGCAGCAGCATCAACTGCGGAAATTATAGAAATTCTGCCATCTCTATGGCCCTACACGACCTCATAGGGATTGACTCTGCGGGTTCAGGGCAGTCCCTACTGGAGGACACTACTAGTAGCAAGCTAGGAGGGACTACCCATTTTTCAAACCCATCGTCGCTAGTCACAAGCTTGAGCAGCTCAAGGGAAGCTAGCCCGGATAAGTCGGGACCCACATTGCTGTTTCCGAAGCCTCCGTCCAGCAAGATGGTGGGTAGCCCAGTAAGCTCGTGGTTCCCTTCGGCGGCCCAATTGAGGCCGGGTTCTGCTATATCCATGTCTCACTTGCCTGTTTTTGCGGCTTGGAATGATACCTGA 2082 0.476 MKSLNDSNNNDATGNANHHPNWLGFSLSPHMKMELTSPPPLHHHYHHHHQPQASASASTAPLAVSSSASVPTTFCLSPSHLTTSYGGICYASATDNSPFHSPLSVMPLKSDGSLCIMEALTRSQSQAMVPTSSPKLEDFLGGATMGAHDYGSSDRAAMALSLDSIYYSTQNAAETHDETHRDHSLDFLSEPFRNQQDHISLQSHPFYSGIAYHPLYQTPPMAEEGIACFKNWGVAPRDYSTQQTVEHKKNNGSMVDDSGASGSVGKVGCGDLQSLSLSVSPGSQSSCVTAPQQISPSGTDVVVAMDAKKRSAGKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYHVELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKEREPPRTSELAAAANMMMQSNNGEAVVQVQGQRNSNGENGSEWKMVYNESNNSSCDQKSSSINCGNYRNSAISMALHDLIGIDSAGSGQSLLEDTTSSKLGGTTHFSNPSSLVTSLSSSREASPDKSGPTLLFPKPPSSKMVGSPVSSWFPSAAQLRPGSAISMSHLPVFAAWNDT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1072 693 Gene3D AP2/ERF domain 334 400 IPR036955 GO:0003700|GO:0006355
Sto5g1072 693 Gene3D AP2/ERF domain 434 494 IPR036955 GO:0003700|GO:0006355
Sto5g1072 693 SMART rav1_2 335 404 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 SMART rav1_2 434 498 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g1072 693 CDD AP2 433 494 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 MobiDBLite consensus disorder prediction 610 642 - -
Sto5g1072 693 CDD AP2 334 398 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 Pfam AP2 domain 435 484 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 Pfam AP2 domain 335 390 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 MobiDBLite consensus disorder prediction 33 60 - -
Sto5g1072 693 ProSiteProfiles AP2/ERF domain profile. 335 398 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 MobiDBLite consensus disorder prediction 610 661 - -
Sto5g1072 693 PRINTS Ethylene responsive element binding protein signature 336 347 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 PRINTS Ethylene responsive element binding protein signature 474 494 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 ProSiteProfiles AP2/ERF domain profile. 434 492 IPR001471 GO:0003700|GO:0006355
Sto5g1072 693 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 18 691 - -
Sto5g1072 693 SUPERFAMILY DNA-binding domain 334 400 IPR016177 GO:0003677
Sto5g1072 693 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 691 - -
Sto5g1072 693 SUPERFAMILY DNA-binding domain 433 494 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1072 Sto-Chr5 7242500 7245692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1072 1 543 AP2-EREBP Transcription Factor Family AT4G37750 50.350 1.38e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sto5g1072 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1072 K09285 - zju:107420624 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1072 5 7242500 7245692 Sto9g3473 9 34087416 34091878 CCT
Sto5g1072 5 7242500 7245692 Sto5g1072 5 7242500 7245692 ECH