Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1065 ATGGGGAGGGCTCCTTGCTGCGACAAAGCGAACGTGAAGAGAGGGCCTTGGTCTCCTGACGAAGATGCTAAGCTCAAGTCTTATATTCAACAACATGGTACTGCTGGTAATTGGATTGCTTTGCCTCAAAAGATCGggCTGAAGAGATGCGGGAAGAGTTGCCGTCTTAGGTGGCTCAACTATCTGAGACCTAATATAAGGCATGGGGGTTTCTCTGAGGAAGAAGACAACATTATTTGCAGCCTCTACCTTAGTATTGGAAGCAGGTGGTCGGTGATCGCAGCACAATTGCCTGGAAGAACAGACAATGATATAAAGAACTATTGGAACACAAGGCTGAAGAAGAAGCTTCTGGGTAAGCACCGTAAGGAACAAGAAGCACGTCATcataagcagaagcagaagcagaagcaagCTGAAGAAGCCGTATTAATGAAACACACTACTACTACTGCTTCTGCTTATTCTGATTATCCCTTAATTAGGATGAATATGGTTGTGGAAAATACGAGTCAACCACAAGAGCTGCCTTATAACTATAATTGGCCACTCATGCCTGTCTTGCCTCCCTCCTTCTCCAATGAGTCATCACATCATCATAGTTTCAACGACCAAGATTCCATCAGAAGTTTACTTCTCAAGCTGGGAGGAAGATTCTCCcactctcatcatcatcatcatcatcatgtttATCGCCCATCCCTGCAGGATACTTTGAACACTACTAATAATCATAATATTATTGTTCCTCCTATGATGGGTACTGATGGTCAATTAGTTATCCCACAAGTACAAGTAGCAGTACCAccacaacaaattaattatgatGAAGAGCACAAGCAGCTTAATAATACTGgggcatcttcttcttcttcttcttcagctgGTTGCATCAtcagcaataataataatactagtaTTATTGATGACAACAACCAACTAGAAATGGGACTTGATGGTGTGGAGGAGTTGTTATTGTATGGGGAAGAGGACATGATGGTCAATATTGAAAAGATGATGATAGGCTTAGGCCCTGCagttacttctacttctacttgTACCAATTGGTGTGACAGTACCATCACcagtactactactactacttcaATATACCAACACCAACAATGTGCTTTTCAAGATCATCACTTGAGCTACCATGATGCTTAA 1167 0.3633 MGRAPCCDKANVKRGPWSPDEDAKLKSYIQQHGTAGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYLSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQEARHHKQKQKQKQAEEAVLMKHTTTTASAYSDYPLIRMNMVVENTSQPQELPYNYNWPLMPVLPPSFSNESSHHHSFNDQDSIRSLLLKLGGRFSHSHHHHHHHVYRPSLQDTLNTTNNHNIIVPPMMGTDGQLVIPQVQVAVPPQQINYDEEHKQLNNTGASSSSSSSAGCIISNNNNTSIIDDNNQLEMGLDGVEELLLYGEEDMMVNIEKMMIGLGPAVTSTSTCTNWCDSTITSTTTTTSIYQHQQCAFQDHHLSYHDA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1065 388 CDD SANT 71 113 IPR001005 -
Sto5g1065 388 PANTHER OS09G0431300 PROTEIN 1 350 - -
Sto5g1065 388 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sto5g1065 388 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto5g1065 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sto5g1065 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Sto5g1065 388 PANTHER OS09G0431300 PROTEIN 1 350 - -
Sto5g1065 388 Gene3D - 70 145 - -
Sto5g1065 388 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto5g1065 388 Gene3D - 7 68 - -
Sto5g1065 388 CDD SANT 16 62 IPR001005 -
Sto5g1065 388 MobiDBLite consensus disorder prediction 119 140 - -
Sto5g1065 388 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sto5g1065 388 SMART sant 13 64 IPR001005 -
Sto5g1065 388 SMART sant 67 115 IPR001005 -
Sto5g1065 388 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto5g1065 388 Coils Coil 120 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1065 Sto-Chr5 7172580 7174075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1065 1 214 MYB Transcription Factor Family AT3G49690 59.174 3.55e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g1065 Myb_DNA-binding 6.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1065 K09422 - fve:101303879 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1065 5 7172580 7174075 Sto5g1065 5 7172580 7174075 ECH