Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1061 CTGAGCGACACCACTGGTGGGAGGCCCAATTTCTTGTACTCCTCCGGTGCCGCCGGCGTTGGCGTTGGTGTTGGGTACGGGAGAAGCGGCGGCGGCGTCGGGCATCAGCTTCCGATGAACAGCTTCCATCTTCACTCCGACTGCTTTCATCAATCGGATCACCAGCACCCCACTACTACAGTGAAAACCGAAGGCAATAATAACAATATATTTCAGTACCCTCTAATGAGAGGGAATCTCCACCACACGATGCAACCACCTCCGGGAGACACATCCAACGAAGTGGAAGCCATCAAGGCCAAGATCATCGCTCACCCTCACTACTCCAATCTTCTACAAGCCTACATGGATTGCCagaagGTGGGAGCTCCGCCGGAAGTGGTGGCGCGTCTGGCTGCTGCTCGGCAGGAGTTCGAGGCACGGCAGCGATCTTCTTCCACTAACTCGAGGGAATTAGTGTCCAAGGACCCCGAACTCGACCAATTCATGGAAGCATACTATGACATGCTGGTGAAGTATAGAGAGGAATTAACGAGGCCTATACAAGAAGCTATGGATTTCATGCGCAGGATTGAAACTCAGCTCAATATGCTTTGCAATGGACCCCTACGCATCTTCTCTGATGAGAAATGTTCAGGGGGTGGATCATCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAACTGCCGGAGATAGATCCGAGAGCCGAAGACCGCGAGCTGAAGAACCACTTGTTGAAGAAGTATAGCGGTTACTTGAGCAGCCTTAAGCAAGAACtctccaagaagaagaagaaaggcaaACTGCCCAAGGATGCCAGGCAAAAGCTTCTCAGCTGGTGGGAACTACACTACAAATGGCCCTATCCTTCGgaATCAGAGAAGGTGGCATTGGCTGAATCGACTGGATTGGACCAAAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAAAGACACTGGAAGCCATCGGAAGACATGCAATTCATGGTGATGGATGGGCTGCATCCCCAGAGTGCAACTCTCTTTATGGATGGTCACTACATGCCAGATGGACACTACCGTCTAGGCCCATGA 1080 0.4944 LSDTTGGRPNFLYSSGAAGVGVGVGYGRSGGGVGHQLPMNSFHLHSDCFHQSDHQHPTTTVKTEGNNNNIFQYPLMRGNLHHTMQPPPGDTSNEVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSTNSRELVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFSDEKCSGGGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLFMDGHYMPDGHYRLGP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1061 359 MobiDBLite consensus disorder prediction 209 235 - -
Sto5g1061 359 SMART HOX_1 263 328 IPR001356 GO:0003677
Sto5g1061 359 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
Sto5g1061 359 Pfam KNOX1 domain 97 139 IPR005540 GO:0003677|GO:0005634
Sto5g1061 359 ProSitePatterns 'Homeobox' domain signature. 299 322 IPR017970 GO:0000981|GO:0006355
Sto5g1061 359 Pfam ELK domain 241 262 IPR005539 GO:0003677
Sto5g1061 359 SUPERFAMILY Homeodomain-like 262 337 IPR009057 -
Sto5g1061 359 Pfam KNOX2 domain 153 199 IPR005541 GO:0003677|GO:0005634
Sto5g1061 359 Gene3D - 266 328 - -
Sto5g1061 359 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 8 351 - -
Sto5g1061 359 CDD homeodomain 273 325 IPR001356 GO:0003677
Sto5g1061 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 351 - -
Sto5g1061 359 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Sto5g1061 359 SMART ELK_2 241 262 IPR005539 GO:0003677
Sto5g1061 359 SMART KNOX2_2 149 200 IPR005541 GO:0003677|GO:0005634
Sto5g1061 359 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Sto5g1061 359 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1061 Sto-Chr5 7142593 7146332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1061 47 359 Homeobox Transcription Factor Family AT4G08150 72.136 6.50e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto5g1061 KNOX2 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1061 - - gmx:100807602 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1061 5 7142593 7146332 Sto5g1061 5 7142593 7146332 ECH