Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1058 ATGGGAAGAGCTCCCTGCTGTGATAAAGCAAATGTGAAGAGAGGCCCTTGGTCTCCTCAAGAAGACGCCACTCTCAAGTCTTATGTACACGCTCATGGCACTGGTGGTAACTGGATTGCACTCCCCAGAAAAGctggCCTTCGGAGGTGTGGCAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACACGGAGGCTTTACTGAAGAAGAGGACAACATCATTTCGTCCCAGCTTCCTGGTAGAACAGACAATGATGTGAAGAACTACTGGAACACCAAACTAAAGAAGAAGCTAATGGCAGGAAAAGTGAGCTTCAATACCCACACTACGAGTACTACCCACCATCTTCCCAATTCCACCCCATTACTAACCCATATTCCAGATTTCCCTGCCTCCCAAATTCAGACTCCTTCACCCTCCATTATCCTCACCGATTCCAATTCTGGGTTTAACGCTCAAATCATGAATTTTGACCCAAACATTCAATTATACAGTCCAGAGTTCGTGGATGTGTCAGAAATGAATGCAAGTTCAAGCAACATGATGGCTTTGTCTCAGGAAGGTTCTAGCAGCATTTCGGATTCAACTCTAATTGCAATGGGGAACAAGTGCTTGTCGTCTCAGATGGATCATTCTGGAGATGAAGCTACTCAAGTGTTGATGGATTTTGGGTTCGAATTTCCTTGTGATGATCTAGTCAATGGCCTTTACTCTCAAGACAAAGTTGGTGAATTTGCTCCAACCTATCATCACTACCCTGATCAGCTCATCGATTTTAGCTATGCTGACATTAAGCCACAAGGACTGAATCAAAATGTTGTTTAA 840 0.4429 MGRAPCCDKANVKRGPWSPQEDATLKSYVHAHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIISSQLPGRTDNDVKNYWNTKLKKKLMAGKVSFNTHTTSTTHHLPNSTPLLTHIPDFPASQIQTPSPSIILTDSNSGFNAQIMNFDPNIQLYSPEFVDVSEMNASSSNMMALSQEGSSSISDSTLIAMGNKCLSSQMDHSGDEATQVLMDFGFEFPCDDLVNGLYSQDKVGEFAPTYHHYPDQLIDFSYADIKPQGLNQNVV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1058 279 PANTHER OS09G0431300 PROTEIN 1 187 - -
Sto5g1058 279 SMART sant 67 101 IPR001005 -
Sto5g1058 279 SMART sant 13 64 IPR001005 -
Sto5g1058 279 PANTHER OS09G0431300 PROTEIN 1 187 - -
Sto5g1058 279 Gene3D - 7 68 - -
Sto5g1058 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Sto5g1058 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 103 IPR017930 -
Sto5g1058 279 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto5g1058 279 SUPERFAMILY Homeodomain-like 14 100 IPR009057 -
Sto5g1058 279 CDD SANT 16 62 IPR001005 -
Sto5g1058 279 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto5g1058 279 Gene3D - 77 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1058 Sto-Chr5 7107246 7108556 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1058 1 117 MYB Transcription Factor Family AT5G57620 66.412 1.86e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto5g1058 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1058 K09422 - gmx:100817747 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1058 5 7107246 7108556 Sto5g1058 5 7107246 7108556 ECH