Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0099 ATGGCGTCTTCTTTGCCTCTTTCTCATCCTACTTCGCCCACCTTCTTCTCTAAAACCCACCAGTTGAAAAGTTCGCGCCTTGACTTGCGGCGACCCAGCTTCTCGTGTAGCAGTAGCAGTCATACCCAAAACAGAGTTCGACCCGTTAAAGCTTCCGTTCATGCACCCTCATTTCCCTTGTTTCAACCTTCCAAGGTTGAAGAATCGTCGTCCTCAGAGTTGGAGCCAGCAGACCCCGATTTCTACAAGATAGGTTATATCCGAAGCGTGCGAGCTTATGGAATAGAATTTAAGGAAGGTCCTGAAGGATTTGGTGTGTATGCTTCTAAAGATGTAGAACCTCTTCGCCGAGCCAGGGTTATTATGGAAATTCCTCTTGAATTGATGTTAACCATTAGTCAGAAGCTCCCATGGATGTTCTTCCCTGATATAGTTCCTGTGGGACATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGCACCTAAGATTAGCATGCCTCCTGTTATATGCATTGGACTGTGAAGGCAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCGGATGAGTGCACCAGCTTACTTCTGGCAACAGAGGAGGATCTTTTGGAGCTGCAGGATCCCAATCTTGCTTCTACAATGAGGAACCAGCAACACCAAATCATAGAATTTTGGGAGAAGAACTGGCACAATGGCGTTCCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATGTGGGCAGTGAGTATAGCACAATCAAGATGCATCAATATGAAAATGAGAATTGGTGCACTTCAGCAAGATGCAAATATGCTGATTCCTTATGCTGACATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTATAAGGACCGGATGCTTGAAGTGCTAATAAATGCTGGACAGAAGATTAGAAAGGGAGATGAGaTGACAGTCGATTACATGAGCGGACAAATGAATGACATGTTTATGCAAAGATATGGATTTTCATCACCTGTGAATCCTTGGGATGTAATCAAGTTCTCAGGAAATGCACGTATTCATTTGGATTCTTTCTTATCAGTGTTCAATATATCTGGCCTTCCTGAAGAGTATTATCATAACAATCTTCTATCTAACATGGGAGATACTTTTGTTGACGGAGCAGTCATAGCTGCAGCAAGAACGTTGCCAACTTGGTCAGATGGGGATGTACCACCAGTCCCTAGTGTGGAAAGAAAGGCTGTGAAGGAGTTACAAGAAGAATGCCAACGAATGCTTTCAGATTTTCCCACAACCGCAAAGCAAGACCAGAAATTGCTAGATTCCTTGCAAGAAGCTTCTAGGACACGTGAAGCTGCAATAAAGTATAGATTGCACCGGAAATTGTTTATAGAGAAAGTAATACAAGCATTGGACATCTATCAAGAGCAATTACTCTTCTGA 1461 0.4278 MASSLPLSHPTSPTFFSKTHQLKSSRLDLRRPSFSCSSSSHTQNRVRPVKASVHAPSFPLFQPSKVEESSSSELEPADPDFYKIGYIRSVRAYGIEFKEGPEGFGVYASKDVEPLRRARVIMEIPLELMLTISQKLPWMFFPDIVPVGHPIFDIINSTNPETDWHLRLACLLLYALDCEGNFWQLYGDFLPSADECTSLLLATEEDLLELQDPNLASTMRNQQHQIIEFWEKNWHNGVPLKIKRLARDPQRFMWAVSIAQSRCINMKMRIGALQQDANMLIPYADMLNHSFEPNCFFHWRYKDRMLEVLINAGQKIRKGDEMTVDYMSGQMNDMFMQRYGFSSPVNPWDVIKFSGNARIHLDSFLSVFNISGLPEEYYHNNLLSNMGDTFVDGAVIAAARTLPTWSDGDVPPVPSVERKAVKELQEECQRMLSDFPTTAKQDQKLLDSLQEASRTREAAIKYRLHRKLFIEKVIQALDIYQEQLLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0099 486 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 338 479 IPR036464 -
Sto13g0099 486 CDD SET_LSMT 94 341 - -
Sto13g0099 486 Gene3D set domain protein methyltransferase, domain 1 86 341 - -
Sto13g0099 486 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 53 479 - -
Sto13g0099 486 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 53 479 - -
Sto13g0099 486 Pfam Rubisco LSMT substrate-binding 416 467 IPR015353 -
Sto13g0099 486 Pfam SET domain 103 326 IPR001214 GO:0005515
Sto13g0099 486 Gene3D - 368 484 IPR036464 -
Sto13g0099 486 ProSiteProfiles SET domain profile. 93 327 IPR001214 GO:0005515
Sto13g0099 486 SUPERFAMILY SET domain 101 342 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto13g0099 SET 5.2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0099 13 824702 833668 Sto13g0099 13 824702 833668 ECH