Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1502 ATGGGCAACCTCTTTGGCAAAAATAAAAAGCGTGGCACCCACAGTTCCAGAAATGATAAAGACAGTGGTGGAAGAATCTACACTACCGTGAACAACAGAGGTTTACCACCCAATTTTCCAACGCAACTACCTCAGCCACCGCCTCCACCGCTATTGTATCCAACTCTAGAACCTCCGCCACCGTTACCGGCGCAACCACAATCCATGTTCAAGAAACCGAGTTTTGGGAGACTTAATTCTAAGCAGAACTCATCAGTCATGAACAAAAAGCAATCTGCCAAGAAGTATGCTTTGATTCCTGACAACTTCAGTACCCTTGAACAGGTGACAACAGCCTTGAGGAAAGAAGGATTAGAATCATCCAATCTCATCCTTGGAATTGATTTTACAAAGAGCAATGAATGGACTGGCAGAATCTCATTCAATAATAGAAGCCTGCATGCAATTGGAAGTACACCAAACCCTTATGAGAAGGCCATCTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATCCCATGCTTTGGCTTTGGTGATGCTACCACCCATGATCAAGAAGTGTTCAGCTTTCACAGTGATCATTCATCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATTGTTCCGAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCAGTGATTGAGGCTGCCATAGACATAGTTGAGAAAAATCGTGGGCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTATCGACACTAGAGATGGAGAACTCAGTCCTCAAGAAGAGAAGACAATTAAAGCAATCGTTGATGCAAGTGCATATCCGCTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTTGATGACAAGATACCGGCACGTGATTATGACAATTTTCAGTTTGTTAATTTCACAGACATTATGTCCAAAAACGCCAGCCCGTCTGAGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATAGAATTTGGAATACTCGGACGTGTAACTGGAAGAGCAAAGAGAATAGTTCCAAAACCTCCTCCTGTTCCATATTCTAGGCCTGCGCCTGCACCAATACCAACACTAGCGCGTTTACCCAGCAATACCACAGCATCCACAGCTGATGAGCAAAACCAAGCGGCCTGCCCTGTTTGTTTGACCAATGCAAGAGATTTGGCCTTTGGATGTGGGCACATGACTTGCAGAGATTGTGGATACAAGTTAACTAATTGTCCCATTTGCCGACAGAGGATCACTAGTCGTCTCAGGGTGTACAGCGGGTGA 1362 0.4464 MGNLFGKNKKRGTHSSRNDKDSGGRIYTTVNNRGLPPNFPTQLPQPPPPPLLYPTLEPPPPLPAQPQSMFKKPSFGRLNSKQNSSVMNKKQSAKKYALIPDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSIDTRDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPARDYDNFQFVNFTDIMSKNASPSEKEAAFALAALMEIPFQYKATIEFGILGRVTGRAKRIVPKPPPVPYSRPAPAPIPTLARLPSNTTASTADEQNQAACPVCLTNARDLAFGCGHMTCRDCGYKLTNCPICRQRITSRLRVYSG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1502 453 Pfam Zinc finger, C3HC4 type (RING finger) 406 446 - -
Ssu8g1502 453 PANTHER COPINE FAMILY PROTEIN 1 1 452 - -
Ssu8g1502 453 SMART ring_2 408 440 IPR001841 -
Ssu8g1502 453 Pfam Copine 145 356 IPR010734 -
Ssu8g1502 453 MobiDBLite consensus disorder prediction 1 89 - -
Ssu8g1502 453 CDD RING-HC_RGLG_plant 408 451 IPR045317 GO:0061630|GO:0070534
Ssu8g1502 453 SMART VWA_4 120 323 IPR002035 -
Ssu8g1502 453 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 452 - -
Ssu8g1502 453 MobiDBLite consensus disorder prediction 39 67 - -
Ssu8g1502 453 SUPERFAMILY vWA-like 121 304 IPR036465 -
Ssu8g1502 453 MobiDBLite consensus disorder prediction 22 38 - -
Ssu8g1502 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 452 IPR013083 -
Ssu8g1502 453 MobiDBLite consensus disorder prediction 72 89 - -
Ssu8g1502 453 ProSiteProfiles Zinc finger RING-type profile. 408 441 IPR001841 -
Ssu8g1502 453 SUPERFAMILY RING/U-box 401 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1502 Ssu-Chr8 30783644 30795931 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1502 8 30783644 30795931 Ssu8g1502 8 30783644 30795931 ECH
Ssu8g1502 8 30783644 30795931 Ssu2g0462 2 26693319 26704585 PCT