Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0382 ATGGACCCTCTCCCAACGTTCCTCTTTCTCATCGCCGTAGCGACCCTCGTCTCCGGTCGCCGTGACCTCGCCGGAGACTTTCTCCGATTGCCCTCCCAACCCGACAACGATGACAACGTCCAGGGCACCAGGTGGGCCATCCTCCTTGCCGGTTCCAACGGCTACTGGAATTACAGGCATCAGGCTGATATTTGTCATGCCTATCAAATACTGAGGAAAGGTGGCCTGAAGgaagaaaatattattgtttttatgtatGATGACATTGCTTTCAATGAGGAGAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGGGATGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGCGAAGATGTTACTGCTAATAACTTTTTTGCTGCTTTACTTGGAAATAAGTCGGCACTTACTGGCGGCAGTGGGAAGGTTGTGGACAGTGGCCCCGATGATcgtatatttatatactattcTGATCATGGAGGTCCAGGGGTGCTTGGGATGCCTGCTGGTCCTTACTTATATGCATCTGATCTGATTGAAGTCTTGAAGAAAAAGCATGCTTCTGGAACATATAAAAGCCTAGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTTCCTGAGGATATCAATATTTATGCAACTACAGCTTCGAATGCAGAAGAAAGTAGTTGGGGAACATATTGCCCCGGGGAGTATCCTAGTCCTCCCCCAGAATATACAACCTGCTTGGGTGACCTGTACAGTGTTGCTTGGATGGAAGACAGTGACAGGCACAATTTGCGAACAGAAACTTTGCACCAGCAATATAAATTGGTTAAAGAACGGACCATATATGGAGGGATGTACTATGGCTCTCACGTGATGCAGTATGGTGATATAGAGCGTAGCAGCGATGTACTCTTCCTGTATTTGGGTACAAATCCTGCTAATGATAATTTCACTTTTGCGGATGAAAACTCCTTAGGGTCACCTTCAAAAGCAGTCAACCAACGGGATGCTGATCTCATCCATTTTTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCCCAGGAAAAATGCAGCTCAGAAACAAGTTCTGGAAGCAATGTCTCACAGAATGCATATAGACAACAGTGTGAAACTTGTTGGAAAGCTTTTATTTGGCATTGAAAAGGGTCCAGAAGTACTCAATGCTGTTAGGCCGTCTGGATTGGCACTTGTTGATGACTGGGACTGCCTGAAAACCATGGTAAGGGCTTTTGAGACACATTGTGGATCCTTGTCTCAGTATGGGATGAAACATATGAGGTCCTTTGCGAACATCTGCAATGCAGGAATAAAGAATGAGCAAATGGCTGAGGCCTCGGCACAAGCTTGTGTCAGTATTCCTGCCAATACCTGGAGTTCTCTGCAAAGGGGTTTCAGTGCATAA 1440 0.45 MDPLPTFLFLIAVATLVSGRRDLAGDFLRLPSQPDNDDNVQGTRWAILLAGSNGYWNYRHQADICHAYQILRKGGLKEENIIVFMYDDIAFNEENPRPGVIINKPDGDDVYEGVPKDYTGEDVTANNFFAALLGNKSALTGGSGKVVDSGPDDRIFIYYSDHGGPGVLGMPAGPYLYASDLIEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAEESSWGTYCPGEYPSPPPEYTTCLGDLYSVAWMEDSDRHNLRTETLHQQYKLVKERTIYGGMYYGSHVMQYGDIERSSDVLFLYLGTNPANDNFTFADENSLGSPSKAVNQRDADLIHFWDKFRKAPEGSPRKNAAQKQVLEAMSHRMHIDNSVKLVGKLLFGIEKGPEVLNAVRPSGLALVDDWDCLKTMVRAFETHCGSLSQYGMKHMRSFANICNAGIKNEQMAEASAQACVSIPANTWSSLQRGFSA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0382 479 PIRSF AE 3 479 IPR043577 GO:0004197|GO:0051603
Ssu5g0382 479 Gene3D - 339 468 IPR046427 -
Ssu5g0382 479 PANTHER VACUOLAR-PROCESSING ENZYME 4 478 - -
Ssu5g0382 479 PIRSF Legumain 3 479 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 Pfam Peptidase C13 family 44 314 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 Gene3D - 42 338 - -
Ssu5g0382 479 PRINTS Hemoglobinase (C13) cysteine protease signature 194 210 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 PRINTS Hemoglobinase (C13) cysteine protease signature 145 164 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 PRINTS Hemoglobinase (C13) cysteine protease signature 45 69 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 PRINTS Hemoglobinase (C13) cysteine protease signature 70 99 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 PRINTS Hemoglobinase (C13) cysteine protease signature 117 132 IPR001096 GO:0006508|GO:0008233
Ssu5g0382 479 PANTHER HEMOGLOBINASE FAMILY MEMBER 4 478 IPR001096 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0382 Ssu-Chr5 8144710 8150737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0382 K01369 - gmx:100784318 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0382 5 8144710 8150737 Ssu5g0382 5 8144710 8150737 ECH