Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0379 ATGCAATCAAGGGGTGTGGCCCTTGAAGAGGGAAAGGAAAGAAGCAATCAATCTAAGCCTTTGAGACCAGTGCGGCTACTTGTGTTGTTTTTTGCTCTATGTGTTGTGTTCTCGGTCGTTAGCATATACACTGTTAAGCATTTTGGAATTGAGAGTGTGGTCACCACTGTGAGTTCTACATTTCAGCCATGTTATGAGGAGCCGGGTGGTTTGGATAAGTGGATTAGGCCACCTTCGAGCCTGATCCACAACATGAGTGACAAAGAACTGTTGTGGAGGGCTTCCTTTGTTCCAAGGATCAAGGGGTACCCTTTTCCTAGAGTTCCCAAGATTGCATTCATGTTCCTGACCAAGGGACCATTGCCTCTAGCACCTCTTTGGGAGAGGTTTCTCAAGGGGCATGAGAAGCTTTATTCCATATATATTCATTCATTGCCCTCATATCAACCTCAGTTTCCTCCTTCATCTGTCTTTTACAACAGGCAAATCCCTAGCCAGGTTTCTGAGTGGGGAAGGATGAGCATGTGTGATGCTGAAAGAAGACTCCTTGCTAATGCATTGCTTGATATCTCCAACGAGTGGTTCATTCTGCTGTCTGAATCATGCATTCCCCTCTACAATTTCAGTCTTGTCTACCATTACATAATGAAATCCAAACACAGCTTCATGGGTGCATTTGATGATCCCGGTCCATTTGGAAGAGGACGCTACAACGAGAACATGGCCCCTCTGGTGAATATCACCAAGTGGCGCAAGGGCTCTCAATGGTTTGAAATAAATCGCAAGCTCGCTGTCAACATAGTTGAGGACACTACATTTTATCCAGTATTTGAACAATATTGTAGGCCAGCTTGCTACGTCGACGAGCACTATTTCCCCACCATGCTTACCATTGAAGCAGGGAATGTGTTGGCAAATAGGAGCATAACTTGGGTGGACTGGTCTAGAGGTGGAGCTCACCCAGCTACATTTGGAAGAAATGATATTACAGAAGAGTTTTTCAATAGAGTTCGTGGAGGTCACAAATGCCTATACAACAATAGAAACTCTTCAGTTTGTGTTCTTTTTGCCAGAAAATTTGCTCCTAGTGCTTTGGAACCTTTGTTACATATGGGGGATACAAAGGTATTGGACTTTTGA 1140 0.4421 MQSRGVALEEGKERSNQSKPLRPVRLLVLFFALCVVFSVVSIYTVKHFGIESVVTTVSSTFQPCYEEPGGLDKWIRPPSSLIHNMSDKELLWRASFVPRIKGYPFPRVPKIAFMFLTKGPLPLAPLWERFLKGHEKLYSIYIHSLPSYQPQFPPSSVFYNRQIPSQVSEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFSLVYHYIMKSKHSFMGAFDDPGPFGRGRYNENMAPLVNITKWRKGSQWFEINRKLAVNIVEDTTFYPVFEQYCRPACYVDEHYFPTMLTIEAGNVLANRSITWVDWSRGGAHPATFGRNDITEEFFNRVRGGHKCLYNNRNSSVCVLFARKFAPSALEPLLHMGDTKVLDF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0379 379 Pfam Core-2/I-Branching enzyme 111 337 IPR003406 GO:0016020|GO:0016757
Ssu5g0379 379 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 8 372 IPR044174 GO:0016757
Ssu5g0379 379 PANTHER - 8 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0379 Ssu-Chr5 8094594 8098178 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0379 - - gmx:100819890 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0379 5 8094594 8098178 Ssu5g0379 5 8094594 8098178 ECH