Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0377 atgggAAAGGTGTTGCACTTTCCAGCAATGGGATCCACAATCTTCATTCTCTTGGGTCTGGTAGTGACAGTTTACGGTTTTGTGGACCATGGTGGCCCATTGTCAAGACAGAAGATTTTGGAAGTTGAGAGAAAATCAAAGCATCTTAGAAGACATTCCTTAAAAACTATCCAgAGTGAAGATGGGGATGTCATTGATTGCATTGACATTAATAAGCAACCAGCCTTTGATCATCCTGCATTGAAAGGTCACAAAATCCAGaTGGCTCCCACTTATAATTCAGCTAAGGAGAACATAACAGCAGGGACCAGTAATAGAACCAGAAATAATGCAAAGAGTGGCAAAGTGATGAAGCAGAGGGCTGAAGGGTCATCTCTGACTGTGAATTCCCAAGTATGGCAGAAAAGTGGAAGATGTCCAGAGGGAACAATTCCTGTTCGCAGAATACGAAAAGGAGACCTGCTCAAGACTCATTCAATTGAAGACTATGGAAGGAAGAAGCCAAGCTTCTCGCACCAACATGTTGGTCAACTGAATAAGAATCTCGAGTCCTTTGTACAACTTAAAAACCACTCTAAGGCAATATTGCTTGCATATGGGTACCGCTACTTGGGAGCCAAAGGAGACATTAAAGTGTGCAACCCTTTTGTTGAAAAGGACGATGAGTACAGCACTTCCCAAGTAGCTCTCTTAACAGGGCCATACAATGACTTTGAGTGCGTTGAAGCTGGATGGGCTGTCAATCCCAGTGTGTATGGAGATAGGCAAACTCGGTTATTTGTATACTGGACGGCCGATGCTTCTAAGAAAACGGGTTGCTTTGATCTGACTTGTCCTGGGTTTGTTCAAACCAGCAATGAAATTGCCTTGGGTGCTGCAATTTATCCAATATCAATTCCCGGTGGGCTTCCATACCAAATAACTATTTACATCTATAAGGATCCCTTTACCAATAATTGGTGGGTGCAATATGGCGAGAGGACCAACATAGGTTATTGGCCACCTGAGTTATTTGAAACAATATGTTACCATGCGGAATCTGTGGAGTGGGGTGGTGAAGTTTACAGCTCAACTATAGGGCACACTCCTCACACTGCAACACAAATGGGCAATGGACAATTTGCTTCAGTCTTTGATGAGTCGTCTTCAATAAAAAGAATGAGAATTCATGACAATTCTGAGGCCTTGAAGATCCCGGAATGGGTTGCTGATTTCTCGGACGAATATAACTGCTATGATGTTTGGTATGTGTCAGATTATGTTGAAGATCCTGAGTTCTATTATGGGGGGCCTGGTAGAAATCCAAAGTGCCCTTAA 1317 0.4267 MGKVLHFPAMGSTIFILLGLVVTVYGFVDHGGPLSRQKILEVERKSKHLRRHSLKTIQSEDGDVIDCIDINKQPAFDHPALKGHKIQMAPTYNSAKENITAGTSNRTRNNAKSGKVMKQRAEGSSLTVNSQVWQKSGRCPEGTIPVRRIRKGDLLKTHSIEDYGRKKPSFSHQHVGQLNKNLESFVQLKNHSKAILLAYGYRYLGAKGDIKVCNPFVEKDDEYSTSQVALLTGPYNDFECVEAGWAVNPSVYGDRQTRLFVYWTADASKKTGCFDLTCPGFVQTSNEIALGAAIYPISIPGGLPYQITIYIYKDPFTNNWWVQYGERTNIGYWPPELFETICYHAESVEWGGEVYSSTIGHTPHTATQMGNGQFASVFDESSSIKRMRIHDNSEALKIPEWVADFSDEYNCYDVWYVSDYVEDPEFYYGGPGRNPKCP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0377 438 Gene3D - 214 328 - -
Ssu5g0377 438 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 50 436 - -
Ssu5g0377 438 Pfam Neprosin 221 431 IPR004314 -
Ssu5g0377 438 Pfam Neprosin activation peptide 56 174 IPR025521 -
Ssu5g0377 438 PANTHER CARBOXYL-TERMINAL PEPTIDASE 50 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0377 Ssu-Chr5 8061312 8064720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0377 - - gmx:100816380 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0377 5 8061312 8064720 Ssu5g0377 5 8061312 8064720 ECH
Ssu5g0377 5 8061312 8064720 Ssu1g3658 1 92200975 92220970 PCT