Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0376 ATGAAGAGAGGGAACGAGGATGAGAAGGTGGCGGGGCCAATGTTCCCAAGGCTACATGTAAATGATGCAGAGAAAGGAGGGCCAAGAGCACCACCAAGGAATAAGATGGCCCTCTATGAACAGTTCAGTATTCCCTCTCAAGGGTTCAATCCACGCCTTCTGCCACTTAAACCGAATTCCTCTTCTAACATAGTTCCGCCACCAACTTCCTCAACCCAGGGGAATGGCCATGAGAGAAGTTATGTCTACCCAGTTCGTTTGCCTTCGCAAATACCTGCTCATCGAGCTGAAAGTTATATTTCTGGCCAATCTGATGGAGCAAGGTCGAACACTTCATCAGTGCAACTTGAACAGAGAAAAAAAGTCGATGAAGGTAATGTTCATGCGTACATTCGCTCAAGGATTGGTCAATCTAATGATAAAATACTGGAGAGTTTCAATGGGAAAAAATTCACTCCTTTGGGTGCTAGGAATTTTTGTTGTTCAGTTGCAGTGCAAAATCATGGTGACAAGGATCGAACACAATTTGGCTCCCCTCTTGTTGATATGAGAAAAGATGTGAGGAGTGGGAATGAGGCGCATCCACATGTAAGCTCAAGTAGACAGCAACCAAAAATGTCTGTCAAAAACAAATCAAGTGAAGAAATTATTGACAGTCTAGTGATGCAAGCCAAGGTGATTCCAAATCAAGAGGATCAAGATTATTCTGTGCCAAATATAAGCAGGTTACATCAGGATGATGCTTGCCTACAGCAGGAGTGTGTGGCTGGGTCCCAGTCCAATGACATTGAACATGGCGATGATCTCCTTAACTCTACAAGGGATATGGATAATGGAAATGCTCTTGTACCAAGAAGCTGTTTTAATTCTGCCGTGAACCAAACCCGTCCACTTGAGGCTACCAATGACGCCGAATATCATCACACTGGGACTGGAGGCCCAATACAGAAGGGAAATTTTGATGAAAGTGGTGACGTTTCCAAGATCTCCACTGTAACAAATTTATCAAGTCTGATAGTTTCTCCTGATGATGTTGTAGGGATATTAGGTCAAAAACATTTCTGGAAAGCAAGACGACAAATTGCCAATCAACAGAGAGTGTTTGCTGTCCAAGTGTTTGAATTGCACAGACTGATTAAGgTCCAACAGCTGATTGCTGCATCACCAGATGTTTTGCTTGAAGATGGCGCTTTTATGGGAAAATTTCCTCTGACAGGATCTACTCCTAAAAATCTCTCATTGGAAGTGGTTGTTGAACCCCAGCAACAAAATCCTAAGCAGAAAAACGATTCTGAAAAGCTAAACCATAATACAGAATGTTCTGCTGAGAATGCAGTTgggaaaaaaatatctttttcgtCCCCCAAAAATGGTAGCCACCTTACAAACCACACCCCGTTTTCTGGAATCCCACACCAGACAAATGTAAGTTCTGATAATAGAACGAGTCCCTGGGGTTTCAGTCAGTCACCTGGACATCAGTGGTTAATTCCTGTCATGTCTCCTACCGAAGGGCTTGTCTACAAGCCATATCCTGGGCCCGGATTTACGGGAACAATGCATGGAGGATGTGGTGGGACATTTGGACAAGCACCTCTTGGTGCTACTTTCATGAATCCTGCCTATCAGTTCCCAGCTTCTCATCAAGTAGTTGGGGTTTCACCGTTCGCTCCTCCGGCCAGTCATGCTTACTTCCCGCCCCATGGCATGCCAGTAATGAATCAAGCAGCATCAGGTTCACCTGTTCAACAGGTGAACCGGTTTGCTGCCCAAGGTTCTCATGGTCAAAATGGTCATTCATCTGTAGAGGGAGCCAATTTTAACACTCATCATAACCAAAGCTCATCTAACTTACCAGTTCAGATGAATGGAGCTACGTTACATGTCAACAAATTTTGCGCATCTAAGGAGAGACAATTACAAGGGAGTTCAGCAAGTAGTCCTAGTGAAATGGCACAAGGAATCAGAGCGAGGAATAATACTGAAGGAAGTGATGcacattctctttctcttcactCTGTTGAAACTAGACAGCAAACGCAAGTCATCAAAGTTGTACCACATAACCGGAGATCCGCAACGGAATCAGCAGCTAGAATTTTTCAATCTATTCAAGAAGAGAGAAAACAGCATGATATAGTCTAG 2145 0.4308 MKRGNEDEKVAGPMFPRLHVNDAEKGGPRAPPRNKMALYEQFSIPSQGFNPRLLPLKPNSSSNIVPPPTSSTQGNGHERSYVYPVRLPSQIPAHRAESYISGQSDGARSNTSSVQLEQRKKVDEGNVHAYIRSRIGQSNDKILESFNGKKFTPLGARNFCCSVAVQNHGDKDRTQFGSPLVDMRKDVRSGNEAHPHVSSSRQQPKMSVKNKSSEEIIDSLVMQAKVIPNQEDQDYSVPNISRLHQDDACLQQECVAGSQSNDIEHGDDLLNSTRDMDNGNALVPRSCFNSAVNQTRPLEATNDAEYHHTGTGGPIQKGNFDESGDVSKISTVTNLSSLIVSPDDVVGILGQKHFWKARRQIANQQRVFAVQVFELHRLIKVQQLIAASPDVLLEDGAFMGKFPLTGSTPKNLSLEVVVEPQQQNPKQKNDSEKLNHNTECSAENAVGKKISFSSPKNGSHLTNHTPFSGIPHQTNVSSDNRTSPWGFSQSPGHQWLIPVMSPTEGLVYKPYPGPGFTGTMHGGCGGTFGQAPLGATFMNPAYQFPASHQVVGVSPFAPPASHAYFPPHGMPVMNQAASGSPVQQVNRFAAQGSHGQNGHSSVEGANFNTHHNQSSSNLPVQMNGATLHVNKFCASKERQLQGSSASSPSEMAQGIRARNNTEGSDAHSLSLHSVETRQQTQVIKVVPHNRRSATESAARIFQSIQEERKQHDIV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0376 714 MobiDBLite consensus disorder prediction 1 35 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 592 616 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 57 77 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 638 668 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 102 116 - -
Ssu5g0376 714 PANTHER FLOWERING PROTEIN, PUTATIVE-RELATED 1 714 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 100 120 - -
Ssu5g0376 714 MobiDBLite consensus disorder prediction 193 212 - -
Ssu5g0376 714 PANTHER PROTEIN EARLY FLOWERING 3 1 714 IPR039319 GO:2000028
Ssu5g0376 714 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0376 Ssu-Chr5 8054810 8059656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0376 K12125 - gmx:100788038 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0376 5 8054810 8059656 Ssu5g0376 5 8054810 8059656 ECH
Ssu1g3662 1 92266020 92269362 Ssu5g0376 5 8054810 8059656 ECH