Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0375 atggcttcttcttctcctccctctccctctcACTCTTATCTTACACACCTTCCTCTTCATCCACCTCTCTCTCACCAAGGTCACTCTTCGCAACACCTTCTCTCTCCTCTATTTTCACCTTCATCTCTTTCCTCCGATTTAGGTGAGAAGCGCGTGGAGGACGATGGATCGCCCGTTCCAATTCACATCGTGACCTCGGCGTCTCAACTTCCCGTTGAATTTCTGGAACCCTCGCCTCAATCGAAGCTCGTCATTGGCTTTGACTGCGAGGGCGTTGACTTGTGTCGCCACGGCACTCTCTGCGTAATGCAGCTTGCGTTTTCTGATGCTGTATACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCAAAGCGTGTAAGCCTGCACTTGAGTCCAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTGGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGAGGAAAGAGATTGTCAACTGACTACATTTCATTTGTTGGCCTCCTTGCAGATACACGTTATTGTGGCATATCATATCTTGAGAAGGAAGAAGTTCGTGACCTCCTTCGACAGGACCCCGAGTTTTGGACACGCAGACCATTATCTGAACTAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATcaccaaatgatggagaaattaAACGAGCGGTCTTTATGGTATCTTGCAGTTCGTGGTGCCTTGTATTGCCGATGTTTCTGTGTGAACAGTAATGATTATGCTGATTGGCCATCTCTACCTCCGATTCCAGATGAGCTGAAAGCTGATGGAAATGGTCCCGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCCCCAGGAAAGATGGGACGTGTTATTGGGAAAAAAGGGGCGACAATTTTGTTCATTAAGGAGTCTTGCAATGCGGAAATTCTCATGGGAGGTGCCAAGGGCCCACCTAACAAGGTTGGTATATCAGCATCGTGTGACGTGATTCATAAGCTCTAG 1071 0.4426 MASSSPPSPSHSYLTHLPLHPPLSHQGHSSQHLLSPLFSPSSLSSDLGEKRVEDDGSPVPIHIVTSASQLPVEFLEPSPQSKLVIGFDCEGVDLCRHGTLCVMQLAFSDAVYLVDAIEGGEELIKACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGGKRLSTDYISFVGLLADTRYCGISYLEKEEVRDLLRQDPEFWTRRPLSELMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDYADWPSLPPIPDELKADGNGPEEEILSVLDVPPGKMGRVIGKKGATILFIKESCNAEILMGGAKGPPNKVGISASCDVIHKL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0375 356 Pfam KH domain 303 335 IPR004088 GO:0003723
Ssu5g0375 356 PANTHER EGALITARIAN, ISOFORM B 48 348 - -
Ssu5g0375 356 SMART 35exoneu6 61 250 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu5g0375 356 MobiDBLite consensus disorder prediction 1 33 - -
Ssu5g0375 356 SUPERFAMILY Ribonuclease H-like 37 278 IPR012337 -
Ssu5g0375 356 Pfam 3'-5' exonuclease 75 249 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu5g0375 356 CDD Egl_like_exo 74 269 - -
Ssu5g0375 356 Gene3D - 14 266 IPR036397 GO:0003676
Ssu5g0375 356 ProSiteProfiles Type-1 KH domain profile. 298 332 - -
Ssu5g0375 356 PANTHER - 48 348 - -
Ssu5g0375 356 CDD KH-I 303 355 - -
Ssu5g0375 356 Gene3D K Homology domain, type 1 288 355 IPR036612 GO:0003723
Ssu5g0375 356 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 302 347 IPR036612 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0375 K18740 - gmx:100788577 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0375 5 8031155 8038489 Ssu5g0375 5 8031155 8038489 ECH