Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0374 ATGGATTTCATGAAGGTCTTCGATCAAACCGTTCGAGAAATAAAGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCTGAAATCGAACAGAAGGTGCTGGATGCAACAGATAATGAACCTTGGGGTCCTCACGGTTCTGCACTGGCGGAGATTGTGCAGGCTaccaaaaaattTACTGAATGTCAAATGGTCATGAATGTCCTTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGGCATTAGCTGTTATAGAATATTTAGTAGCACATGGATCTGAGCGTGCAGTTGATGACATTATAGAACATACTTTTCAGATCTCGGCACTTTCTAGTTTTGAATACGTTGAGCCTAGTGGGAAGGATGTGGGACTCAATGTTAGGAAGAAGGCAGAAAACATTGTGTCCCTTTTGAATGATAGAGATAAAATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAGTATGTTGGAGTTTCTTCTAGTGGAATCACATACAAATCTGGGTCAGCCTCATATAGTAGTGGTGGCAGCTATCAGAGCAGTGGTAAATATGGAGGCTTTGGATCTAGAGATGGTGACAGGTTTAGTGATAGCTATAGAGACAAGGGACcctatgaagaagaaaaagattaccACGGAAAATCACACCATGCCATCTCAAGTGATAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCACGCTCTGTCAGCAAAAGTCAGGAGAACATGTCATCTAGAGTATCAAAGTCATCGACTAATGCAAATAGTTATGGTTCAATTCCTTCTCAAAGTTCAAGTGTACCCGCAAACAATACTGAGGATGACATGGATGACTTTGATCCAAGAGGAACATCTACCAAAGCTTCAGCCGGAAACTCTAACCAGGTTGATCTCTTTGGACAAGATTTAATTGGTGACCTCATGGATGCTCCAACATCTGTTCCTGTAGAAAAGCCAGCAACTAGTAATGTGCCAGAGGTCGATCTTTTTGCAGATGCAACATTTGTATCAGCAGCACCTCATGTGGACAAAGGAGCCAGTTCTCAACCACAGGCTGAGGTGGATCTATTTTCTTCACAACCAGCCATTCCTTCGGTTACACCAACAGTCGACTTGTTTTCCATTTCTGAACCGGTAGTGCAGCCAGTCAGCAAGTCAGAGAACTCTGGTCCTATGAATGACAGCACTATTGATCCCTTTGCTGCTGTTCCTCTTAATAATTTTGATGGATCTGAGATTTTTGGTGATTTTACTGCTCAATCTGATTCTGTGTCTTCACAGCCCTCCAATAATGTTGTCAGTGATGGCAAGCATGATAATAAGACTGGTAAATCTTTAGCAGACTCTAAAGTTTCACTGAAAAAGGATACTTTCCAGGTGAAGTCTGGCGTCTGGGCTGATTCACTAAGCCGTGGACTGATTGATCTCAATATAACTGCTCCTAAAAAAGTATCCCTTGTGGATGTTGGGATTGTGGGTGGATTGAGCGATGGATCAGATGAAAGGGAGAAAGGCCCTCCACCTTCCTTTTACATGGGGAGAGCTATGGGTTCAGGATCTGGTCTTGGTAGGTCCGGATTCACTCCTTCACAGCCAGCAGCTGGAGACGACATATTCTCAAACCTTAGCAGCCAACAATATCAATTTGGTGggttccaaaaataa 1686 0.4199 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIVQATKKFTECQMVMNVLWTRLGETGKDWRYVYKALAVIEYLVAHGSERAVDDIIEHTFQISALSSFEYVEPSGKDVGLNVRKKAENIVSLLNDRDKIHEVRNKAAANRDKYVGVSSSGITYKSGSASYSSGGSYQSSGKYGGFGSRDGDRFSDSYRDKGPYEEEKDYHGKSHHAISSDNQENSFKKGSARSVSKSQENMSSRVSKSSTNANSYGSIPSQSSSVPANNTEDDMDDFDPRGTSTKASAGNSNQVDLFGQDLIGDLMDAPTSVPVEKPATSNVPEVDLFADATFVSAAPHVDKGASSQPQAEVDLFSSQPAIPSVTPTVDLFSISEPVVQPVSKSENSGPMNDSTIDPFAAVPLNNFDGSEIFGDFTAQSDSVSSQPSNNVVSDGKHDNKTGKSLADSKVSLKKDTFQVKSGVWADSLSRGLIDLNITAPKKVSLVDVGIVGGLSDGSDEREKGPPPSFYMGRAMGSGSGLGRSGFTPSQPAAGDDIFSNLSSQQYQFGGFQK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0374 561 Gene3D - 24 164 IPR008942 -
Ssu5g0374 561 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 552 IPR033521 GO:0006623|GO:0030276
Ssu5g0374 561 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 176 301 - -
Ssu5g0374 561 PANTHER EPSIN/ENT-RELATED 1 552 - -
Ssu5g0374 561 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Ssu5g0374 561 Pfam ENTH domain 27 147 IPR013809 -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 502 544 - -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 176 191 - -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 427 443 - -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 200 226 - -
Ssu5g0374 561 CDD ENTH 28 144 - -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 227 279 - -
Ssu5g0374 561 MobiDBLite consensus disorder prediction 427 455 - -
Ssu5g0374 561 SMART enth_2 26 152 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0374 Ssu-Chr5 7992278 7998755 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0374 K12471 - gmx:100809198 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0374 5 7992278 7998755 Ssu5g0374 5 7992278 7998755 ECH