Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0373 ATGGAGGACCTAGTTGCTGATGACTCTTCCACTCAGAAAGAAGAGCTGATGAAACCTATGCGAAAGATTAGGCCTAATGAAGTGATGAAACGTGGTGCCAGAGTTCATGTTCCTGTTTCAATTGCTGAGACTAGGATTTCCAAAAGATATGATGCTATTCCAAGTGGAACACTATATCCAAATGCTGACGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCAGCTATTATTGTGCTAAATAAACCTCCAAAATTGCCGGTTAAGGGGAATTTGCCAGTTCATAATAGCATGGATGCATTGGCAGCTGCAGCACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAGAGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTATCTCATCTCCAGTGGTTGTTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGTTACGTATCAGAGGTATTGGGCATTAGTCATAGGGACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTTTAAATGATGGGAAGACTGAGAGAGTAATACTAGCTCACCATTCCAGTGTAGAACCTCGCCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAAAGATAAATGGATGCTCATGGATTGAGCTGCGTCCACTTACTTACCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCTCTTGGCACACCAATAGTGGGTGACTATAGGTATGGCTGGTTTGTGCACAGCCGATGGAAACAAATGCCACGAGTCGATATTGAGCCAACAACTGGAAAACCATACAAGTTGCGGAGGCCAGAGGGGCTAGATGTTCAGAAGGGAAGCGTTTTATCAAAGGTTCCTCTATTGCATCTTCACTGCAGAGAACTTGTACTCCCCAACATTGCTAAGTTTGtacatgttttgaaaaatagttcAGAAGAACTACACCCTTCACTTAGCGAGCAGCCTGATGTTCTTCGCTTTGTGGCAACAATGCCCTCACATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTCTGA 1107 0.4282 MEDLVADDSSTQKEELMKPMRKIRPNEVMKRGARVHVPVSIAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKAWNDACEVTYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHHSSVEPRQEAVTEYRVLGPKINGCSWIELRPLTYRKHQLRVHCAEALGTPIVGDYRYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFVHVLKNSSEELHPSLSEQPDVLRFVATMPSHMRISWNLMSSYLV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0373 368 SUPERFAMILY Pseudouridine synthase 64 321 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu5g0373 368 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 8 365 - -
Ssu5g0373 368 Gene3D Pseudouridine synthase 62 327 - -
Ssu5g0373 368 Pfam RNA pseudouridylate synthase 79 250 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu5g0373 368 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 8 365 - -
Ssu5g0373 368 CDD PseudoU_synth_RluA_like 79 275 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0373 Ssu-Chr5 7964631 7968476 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0373 - - gmx:100817786 696.427